Protein–RNA interactions for Protein: Q8BRE0

Rd3, Protein RD3, mousemouse

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rd3Q8BRE0 Gm25239-201ENSMUST00000174915 86 ntBASIC41.47■■■■■ 4.23
Rd3Q8BRE0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.42■■■■□ 3.74
Rd3Q8BRE0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
Rd3Q8BRE0 Gm15042-201ENSMUST00000120212 883 ntBASIC36.1■■■■□ 3.37
Rd3Q8BRE0 Gm24109-201ENSMUST00000175489 103 ntBASIC36■■■■□ 3.35
Rd3Q8BRE0 Gm15045-201ENSMUST00000117359 883 ntBASIC35.23■■■■□ 3.23
Rd3Q8BRE0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
Rd3Q8BRE0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.99■■■■□ 3.19
Rd3Q8BRE0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
Rd3Q8BRE0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
Rd3Q8BRE0 Gm23366-201ENSMUST00000175022 89 ntBASIC34.61■■■■□ 3.13
Rd3Q8BRE0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
Rd3Q8BRE0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
Rd3Q8BRE0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.8■■■■□ 3
Rd3Q8BRE0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
Rd3Q8BRE0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.66■■■□□ 2.98
Rd3Q8BRE0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.39■■■□□ 2.94
Rd3Q8BRE0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.36■■■□□ 2.93
Rd3Q8BRE0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.31■■■□□ 2.92
Rd3Q8BRE0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Rd3Q8BRE0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.18■■■□□ 2.9
Rd3Q8BRE0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
Rd3Q8BRE0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.1■■■□□ 2.89
Rd3Q8BRE0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
Rd3Q8BRE0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Rd3Q8BRE0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
Rd3Q8BRE0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Rd3Q8BRE0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.77■■■□□ 2.84
Rd3Q8BRE0 Gm25238-201ENSMUST00000174914 89 ntBASIC32.77■■■□□ 2.84
Rd3Q8BRE0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Rd3Q8BRE0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.73■■■□□ 2.83
Rd3Q8BRE0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
Rd3Q8BRE0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Rd3Q8BRE0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.38■■■□□ 2.77
Rd3Q8BRE0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.33■■■□□ 2.77
Rd3Q8BRE0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
Rd3Q8BRE0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.07■■■□□ 2.72
Rd3Q8BRE0 Psd-208ENSMUST00000224556 2034 ntBASIC32.02■■■□□ 2.72
Rd3Q8BRE0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
Rd3Q8BRE0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Rd3Q8BRE0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.88■■■□□ 2.69
Rd3Q8BRE0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.78■■■□□ 2.68
Rd3Q8BRE0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
Rd3Q8BRE0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.67■■■□□ 2.66
Rd3Q8BRE0 Gm27325-201ENSMUST00000175467 74 ntBASIC31.59■■■□□ 2.65
Rd3Q8BRE0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.54■■■□□ 2.64
Rd3Q8BRE0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
Rd3Q8BRE0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Rd3Q8BRE0 Gm25262-201ENSMUST00000174934 133 ntBASIC31.48■■■□□ 2.63
Rd3Q8BRE0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Rd3Q8BRE0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Rd3Q8BRE0 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Rd3Q8BRE0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.17■■■□□ 2.58
Rd3Q8BRE0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Rd3Q8BRE0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.11■■■□□ 2.57
Rd3Q8BRE0 Rab21-202ENSMUST00000218831 843 ntBASIC31.11■■■□□ 2.57
Rd3Q8BRE0 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.05■■■□□ 2.56
Rd3Q8BRE0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.01■■■□□ 2.56
Rd3Q8BRE0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Rd3Q8BRE0 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
Rd3Q8BRE0 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.9■■■□□ 2.54
Rd3Q8BRE0 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.9■■■□□ 2.54
Rd3Q8BRE0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Rd3Q8BRE0 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
Rd3Q8BRE0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Rd3Q8BRE0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Rd3Q8BRE0 Gm26115-201ENSMUST00000175605 87 ntBASIC30.76■■■□□ 2.51
Rd3Q8BRE0 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
Rd3Q8BRE0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Rd3Q8BRE0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.7■■■□□ 2.5
Rd3Q8BRE0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.69■■■□□ 2.5
Rd3Q8BRE0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.64■■■□□ 2.49
Rd3Q8BRE0 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Rd3Q8BRE0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Rd3Q8BRE0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Rd3Q8BRE0 Gm8109-201ENSMUST00000194076 746 ntBASIC30.58■■■□□ 2.49
Rd3Q8BRE0 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Rd3Q8BRE0 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Rd3Q8BRE0 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.52■■■□□ 2.48
Rd3Q8BRE0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Rd3Q8BRE0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
Rd3Q8BRE0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Rd3Q8BRE0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Rd3Q8BRE0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Rd3Q8BRE0 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.37■■■□□ 2.45
Rd3Q8BRE0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Rd3Q8BRE0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Rd3Q8BRE0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
Rd3Q8BRE0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Rd3Q8BRE0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Rd3Q8BRE0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.23■■■□□ 2.43
Rd3Q8BRE0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Rd3Q8BRE0 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.19■■■□□ 2.42
Rd3Q8BRE0 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.16■■■□□ 2.42
Rd3Q8BRE0 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Rd3Q8BRE0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Rd3Q8BRE0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Rd3Q8BRE0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.07■■■□□ 2.4
Rd3Q8BRE0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
Rd3Q8BRE0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.03■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms