RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeastyeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
WHI3YNL197C COS8P38723 381 aa2.36□□□□□ -2.03
WHI3YNL197C IRC22P40006 225 aa2.36□□□□□ -2.03
WHI3YNL197C BMT5P40493 336 aa2.36□□□□□ -2.03
WHI3YNL197C YGL088WP53151 121 aa2.36□□□□□ -2.03
WHI3YNL197C SSU72P53538 206 aaPredicted RBP2.36□□□□□ -2.03
WHI3YNL197C PDR17P53844 350 aa2.36□□□□□ -2.03
WHI3YNL197C PET191Q02772 108 aa2.36□□□□□ -2.03
WHI3YNL197C PEX12Q04370 399 aa2.36□□□□□ -2.03
WHI3YNL197C YDR114CQ04597 100 aa2.36□□□□□ -2.03
WHI3YNL197C SEC4P07560 215 aaKnown RBP2.36□□□□□ -2.03
WHI3YNL197C RSA4P25382 515 aaKnown RBP2.36□□□□□ -2.03
WHI3YNL197C MIG1P27705 504 aa2.36□□□□□ -2.03
WHI3YNL197C YGP1P38616 354 aaKnown RBP2.36□□□□□ -2.03
WHI3YNL197C ILM1P47155 203 aa2.36□□□□□ -2.03
WHI3YNL197C GIM3P53900 129 aa2.36□□□□□ -2.03
WHI3YNL197C YDR248CQ03786 193 aa2.36□□□□□ -2.03
WHI3YNL197C YML096WQ04489 525 aa2.36□□□□□ -2.03
WHI3YNL197C RAD9P14737 1309 aa2.35□□□□□ -2.03
WHI3YNL197C DRS2P39524 1355 aa2.35□□□□□ -2.03
WHI3YNL197C Q0255P03881 472 aa2.35□□□□□ -2.03
WHI3YNL197C TCA17P32613 152 aa2.35□□□□□ -2.03
WHI3YNL197C COG3P40094 801 aa2.35□□□□□ -2.03
WHI3YNL197C TIF34P40217 347 aaKnown RBP2.35□□□□□ -2.03
WHI3YNL197C RMR1P53060 241 aa2.35□□□□□ -2.03
WHI3YNL197C NOP1P15646 327 aaKnown RBP2.34□□□□□ -2.03
WHI3YNL197C SPS18P32572 300 aa2.34□□□□□ -2.03
WHI3YNL197C APS1P35181 156 aa2.34□□□□□ -2.03
WHI3YNL197C ECM33P38248 429 aaKnown RBP2.34□□□□□ -2.03
WHI3YNL197C YJL144WP47009 104 aa2.34□□□□□ -2.03
WHI3YNL197C YJR056CP47115 236 aa2.34□□□□□ -2.03
WHI3YNL197C YJR141WP47172 347 aaPredicted RBP2.34□□□□□ -2.03
WHI3YNL197C YHR125WP38831 101 aa2.34□□□□□ -2.04
WHI3YNL197C FAR7P43592 221 aa2.34□□□□□ -2.04
WHI3YNL197C YJR146WP47174 117 aa2.34□□□□□ -2.04
WHI3YNL197C GET1P53192 235 aa2.34□□□□□ -2.04
WHI3YNL197C ABF2Q02486 183 aa2.34□□□□□ -2.04
WHI3YNL197C YPL257WQ08974 193 aa2.34□□□□□ -2.04
WHI3YNL197C YOR020W-AQ3E824 90 aa2.34□□□□□ -2.04
WHI3YNL197C GCN3P14741 305 aa2.33□□□□□ -2.04
WHI3YNL197C YRB2P40517 327 aa2.33□□□□□ -2.04
WHI3YNL197C ARC15P40518 154 aaRIP-Chip data2.33□□□□□ -2.04not detected
WHI3YNL197C YJL016WP47072 561 aa2.33□□□□□ -2.04
WHI3YNL197C PRM8P53174 237 aa2.33□□□□□ -2.04
WHI3YNL197C YMR279CQ03263 540 aa2.33□□□□□ -2.04
WHI3YNL197C SAS5Q99314 248 aa2.33□□□□□ -2.04
WHI3YNL197C SAC3P46674 1301 aa2.33□□□□□ -2.04
WHI3YNL197C FKS1P38631 1876 aaKnown RBP2.33□□□□□ -2.04
WHI3YNL197C RPL26AP05743 127 aaKnown RBP2.32□□□□□ -2.04
WHI3YNL197C CCA1P21269 546 aa2.32□□□□□ -2.04
WHI3YNL197C GRE3P38715 327 aaKnown RBP RIP-Chip data2.32□□□□□ -2.04not detected
WHI3YNL197C YER188WP40103 239 aa2.32□□□□□ -2.04
WHI3YNL197C RPL26BP53221 127 aaKnown RBP2.32□□□□□ -2.04
WHI3YNL197C CLP1Q08685 445 aaPredicted RBP2.32□□□□□ -2.04
WHI3YNL197C YHR032W-AP0C5N6 59 aa2.32□□□□□ -2.04
WHI3YNL197C GRX2P17695 143 aaKnown RBP2.32□□□□□ -2.04
WHI3YNL197C SCO1P23833 295 aa2.32□□□□□ -2.04
WHI3YNL197C YBR063CP38083 404 aa2.32□□□□□ -2.04
WHI3YNL197C DOG2P38773 246 aa2.32□□□□□ -2.04
WHI3YNL197C DOG1P38774 246 aa2.32□□□□□ -2.04
WHI3YNL197C FIS1P40515 155 aa2.32□□□□□ -2.04
WHI3YNL197C APJ1P53940 528 aa2.32□□□□□ -2.04
WHI3YNL197C LPP1Q04396 274 aa2.32□□□□□ -2.04
WHI3YNL197C HRT1Q08273 121 aa2.32□□□□□ -2.04
WHI3YNL197C LSO2Q3E772 92 aaKnown RBP2.32□□□□□ -2.04
WHI3YNL197C RPL27AP0C2H6 136 aaKnown RBP2.31□□□□□ -2.04
WHI3YNL197C RPL27BP0C2H7 136 aaKnown RBP2.31□□□□□ -2.04
WHI3YNL197C MER1P16523 270 aa2.31□□□□□ -2.04
WHI3YNL197C FCY2P17064 533 aa2.31□□□□□ -2.04
WHI3YNL197C MRPL28P36527 147 aa2.31□□□□□ -2.04
WHI3YNL197C ATG39Q06159 398 aa2.31□□□□□ -2.04
WHI3YNL197C VPS68Q12016 184 aa2.31□□□□□ -2.04
WHI3YNL197C YKR032WP36127 104 aa2.3□□□□□ -2.04
WHI3YNL197C YNL010WP53981 241 aaKnown RBP2.3□□□□□ -2.04
WHI3YNL197C GGA1Q06336 557 aa2.3□□□□□ -2.04
WHI3YNL197C PSF1Q12488 208 aa2.3□□□□□ -2.04
WHI3YNL197C RPL9AP05738 191 aaKnown RBP2.3□□□□□ -2.04
WHI3YNL197C RSM25P40496 264 aa2.3□□□□□ -2.04
WHI3YNL197C RPL9BP51401 191 aaKnown RBP2.3□□□□□ -2.04
WHI3YNL197C YGR050CP53231 118 aa2.3□□□□□ -2.04
WHI3YNL197C TRM12Q04235 462 aa2.3□□□□□ -2.04
WHI3YNL197C REP2P03872 296 aa2.29□□□□□ -2.04
WHI3YNL197C CDC7P06243 507 aa2.29□□□□□ -2.04
WHI3YNL197C SCM4P32564 187 aa2.29□□□□□ -2.04
WHI3YNL197C YAR068WP39564 161 aa2.29□□□□□ -2.04
WHI3YNL197C MMS2P53152 137 aa2.29□□□□□ -2.04
WHI3YNL197C YML108WQ03759 105 aa2.29□□□□□ -2.04
WHI3YNL197C CDD1Q06549 142 aa2.29□□□□□ -2.04
WHI3YNL197C YNG1Q08465 219 aa2.29□□□□□ -2.04
WHI3YNL197C AKR2Q12013 749 aa2.29□□□□□ -2.04
WHI3YNL197C USB1Q12208 290 aaKnown RBP2.29□□□□□ -2.04
WHI3YNL197C YHR214C-EQ8TGK0 99 aa2.29□□□□□ -2.04
WHI3YNL197C YPR170W-BP0C5R9 85 aa2.29□□□□□ -2.04
WHI3YNL197C SEC17P32602 292 aa2.29□□□□□ -2.04
WHI3YNL197C LSM7P53905 115 aaKnown RBP2.29□□□□□ -2.04
WHI3YNL197C UTP30P36144 274 aaKnown RBP2.28□□□□□ -2.04
WHI3YNL197C MRPL49P40858 161 aaPredicted RBP2.28□□□□□ -2.04
WHI3YNL197C TDA8Q6B2U8 126 aa2.28□□□□□ -2.04
WHI3YNL197C MED6P38782 295 aa2.27□□□□□ -2.05
WHI3YNL197C ERG10P41338 398 aaKnown RBP2.27□□□□□ -2.05
WHI3YNL197C YMD8Q03697 442 aa2.27□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 21.4 ms