RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	YAR068W	P39564	161 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	SLM1	P40485	686 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	BUD25	P85052	153 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	ALG6	Q12001	544 aa	Known RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	PAR32	Q12515	295 aa	Known RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	MPD2	Q99316	277 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	SNF5	P18480	905 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	MEI5	P32489	222 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	URA8	P38627	578 aa	Predicted RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	YTA6	P40328	754 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	EMC5	P40540	141 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	CDC40	P40968	455 aa	Predicted RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	NSE4	P43124	402 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	RSM27	P53305	110 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	PAU4	P53427	120 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	PAL1	Q05518	499 aa	Known RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	YLR179C	Q06252	201 aa	Known RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	TMA17	Q12513	150 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	YKR104W	P0CE69	306 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	GAR1	P28007	205 aa	Known RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	UTR5	P32630	166 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	PAU16	P35994	123 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	SWD2	P36104	329 aa	Predicted RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	CHK1	P38147	527 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	RPA34	P47006	233 aa	Predicted RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	ARG5,6	Q01217	863 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	RTT103	Q05543	409 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	YLR036C	Q07986	203 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	ERG27	Q12452	347 aa	Known RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	TDH3	P00359	332 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected
SSM4	YIL030C	GAL4	P04386	881 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	GDH1	P07262	454 aa	Known RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	CTA1	P15202	515 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	SLC1	P33333	303 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	PTC7	P38797	343 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	CGR1	P53188	120 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	YNL260C	P53846	198 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	GIS1	Q03833	894 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	MSC3	Q05812	728 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	ZEO1	Q08245	113 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	NIP7	Q08962	181 aa	Known RBP	3.1	□□□□□ -1.91
SSM4	YIL030C	YKL023C-A	Q2V2P3	75 aa		3.1	□□□□□ -1.91
SSM4	YIL030C	ADK1	P07170	222 aa	Known RBP	3.09	□□□□□ -1.91
SSM4	YIL030C	BOS1	P25385	244 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	DBF20	P32328	564 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	YER079W	P40052	210 aa	Known RBP	3.09	□□□□□ -1.91
SSM4	YIL030C	YNL165W	P53891	406 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	SAM50	P53969	484 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	REX3	Q12090	404 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	YPR064W	Q12492	139 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	MKK2	P32491	506 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	SRB5	P32585	307 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	MRPL28	P36527	147 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	OSW5	P40219	148 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	SEH1	P53011	349 aa	Known RBP	3.09	□□□□□ -1.91
SSM4	YIL030C	YGL262W	P53054	175 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	YGL114W	P53134	725 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	YML018C	Q03730	393 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	YPR147C	Q06522	304 aa	Known RBP	3.09	□□□□□ -1.91
SSM4	YIL030C	YFH1	Q07540	174 aa		3.09	□□□□□ -1.91
SSM4	YIL030C	KRR1	P25586	316 aa	Predicted RBP	3.09	□□□□□ -1.92
SSM4	YIL030C	AUR1	P36107	401 aa	Predicted RBP	3.09	□□□□□ -1.92
SSM4	YIL030C	MNL1	P38888	796 aa		3.09	□□□□□ -1.92
SSM4	YIL030C	MCM22	P47167	239 aa		3.09	□□□□□ -1.92
SSM4	YIL030C	JAC1	P53193	184 aa		3.09	□□□□□ -1.92
SSM4	YIL030C	CUZ1	P53899	274 aa		3.09	□□□□□ -1.92
SSM4	YIL030C	TDA6	Q06466	467 aa		3.09	□□□□□ -1.92
SSM4	YIL030C	YDL157C	Q12082	118 aa		3.09	□□□□□ -1.92
SSM4	YIL030C	YBR255C-A	Q3E776	120 aa		3.09	□□□□□ -1.92
SSM4	YIL030C	GCD1	P09032	578 aa	Predicted RBP	3.08	□□□□□ -1.92
SSM4	YIL030C	NUP1	P20676	1076 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	MAG1	P22134	296 aa	Known RBP	3.08	□□□□□ -1.92
SSM4	YIL030C	MIG1	P27705	504 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	MRPL16	P38064	232 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	UME6	P39001	836 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	YER188W	P40103	239 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	YIL012W	P40551	113 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	TPC1	P53257	314 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	IZH1	Q03419	316 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	RPC11	Q04307	110 aa	Predicted RBP	3.08	□□□□□ -1.92
SSM4	YIL030C	PAA1	Q12447	191 aa	Known RBP	3.08	□□□□□ -1.92
SSM4	YIL030C	RER1	P25560	188 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	QRI5	P32344	111 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	TAE1	P38340	232 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	LOC1	P43586	204 aa	Predicted RBP	3.08	□□□□□ -1.92
SSM4	YIL030C	HSV2	P50079	448 aa	Predicted RBP	3.08	□□□□□ -1.92
SSM4	YIL030C	YNR021W	P53723	404 aa	Known RBP	3.08	□□□□□ -1.92
SSM4	YIL030C	FDH1	Q08911	376 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	YER190C-B	P0CX94	160 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	YEL077W-A	P0CX95	160 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	YGR296C-B	P0CX96	160 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	YPL283W-B	P0CX97	160 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	YPR204C-A	P0CX98	160 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	SPO7	P18410	259 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	MRS4	P23500	304 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	ATG15	P25641	520 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	RFA3	P26755	122 aa	Known RBP	3.08	□□□□□ -1.92
SSM4	YIL030C	RPB7	P34087	171 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	YIL086C	P40503	102 aa		3.08	□□□□□ -1.92
SSM4	YIL030C	MET28	P40573	187 aa		3.08	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms