RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C MSA2P36157 363 aa3.26□□□□□ -1.89
NPL4YBR170C PRM15Q03262 622 aa3.26□□□□□ -1.89
NPL4YBR170C YML096WQ04489 525 aa3.26□□□□□ -1.89
NPL4YBR170C INM2Q05533 292 aa3.26□□□□□ -1.89
NPL4YBR170C AGC1Q12482 902 aa3.26□□□□□ -1.89
NPL4YBR170C NOT5Q12514 560 aaPredicted RBP3.26□□□□□ -1.89
NPL4YBR170C LSO2Q3E772 92 aaKnown RBP3.26□□□□□ -1.89
NPL4YBR170C RNP1P32385 249 aa3.25□□□□□ -1.89
NPL4YBR170C PRM8P53174 237 aa3.25□□□□□ -1.89
NPL4YBR170C DID2P69771 204 aa3.25□□□□□ -1.89
NPL4YBR170C YML108WQ03759 105 aa3.25□□□□□ -1.89
NPL4YBR170C IES3Q12345 250 aa3.25□□□□□ -1.89
NPL4YBR170C HTL1Q9URQ5 78 aa3.25□□□□□ -1.89
NPL4YBR170C ERG24P32462 438 aaKnown RBP3.24□□□□□ -1.89
NPL4YBR170C YPT52P36018 234 aaKnown RBP3.24□□□□□ -1.89
NPL4YBR170C SRP14P38985 146 aa3.24□□□□□ -1.89
NPL4YBR170C YFR045WP43617 309 aa3.24□□□□□ -1.89
NPL4YBR170C RPA43P46669 326 aa3.24□□□□□ -1.89
NPL4YBR170C NRK1P53915 240 aa3.24□□□□□ -1.89
NPL4YBR170C MRS1P07266 363 aa3.24□□□□□ -1.89
NPL4YBR170C TCA17P32613 152 aa3.24□□□□□ -1.89
NPL4YBR170C MRPS9P38120 278 aa3.24□□□□□ -1.89
NPL4YBR170C TRR2P38816 342 aa3.24□□□□□ -1.89
NPL4YBR170C ALG9P53868 555 aaKnown RBP3.24□□□□□ -1.89
NPL4YBR170C LSM7P53905 115 aaKnown RBP3.24□□□□□ -1.89
NPL4YBR170C ABF2Q02486 183 aa3.24□□□□□ -1.89
NPL4YBR170C ARO80Q04052 950 aa3.24□□□□□ -1.89
NPL4YBR170C NOC4Q06512 552 aaPredicted RBP3.24□□□□□ -1.89
NPL4YBR170C NIP7Q08962 181 aaKnown RBP3.24□□□□□ -1.89
NPL4YBR170C GEP5Q12393 293 aa3.24□□□□□ -1.89
NPL4YBR170C ZWF1P11412 505 aaKnown RBP3.23□□□□□ -1.89
NPL4YBR170C GCY1P14065 312 aaKnown RBP RIP-Chip data3.23□□□□□ -1.89not detected
NPL4YBR170C TRR1P29509 319 aaKnown RBP3.23□□□□□ -1.89
NPL4YBR170C RPF1P38805 295 aaKnown RBP3.23□□□□□ -1.89
NPL4YBR170C YER121WP40076 114 aa3.23□□□□□ -1.89
NPL4YBR170C AIM25P47140 327 aa3.23□□□□□ -1.89
NPL4YBR170C GTR2P53290 341 aa3.23□□□□□ -1.89
NPL4YBR170C YNL140CP53910 189 aa3.23□□□□□ -1.89
NPL4YBR170C GRH1Q04410 372 aaKnown RBP3.23□□□□□ -1.89
NPL4YBR170C FCF1Q05498 189 aaPredicted RBP3.23□□□□□ -1.89
NPL4YBR170C YPL257WQ08974 193 aa3.23□□□□□ -1.89
NPL4YBR170C PUT1P09368 476 aa3.22□□□□□ -1.89
NPL4YBR170C DSF1P0CX08 502 aa3.22□□□□□ -1.89
NPL4YBR170C YNR073CP0CX09 502 aa3.22□□□□□ -1.89
NPL4YBR170C DOG2P38773 246 aa3.22□□□□□ -1.89
NPL4YBR170C DOG1P38774 246 aa3.22□□□□□ -1.89
NPL4YBR170C MRPL49P40858 161 aaPredicted RBP3.22□□□□□ -1.89
NPL4YBR170C MIG2P53035 382 aa3.22□□□□□ -1.89
NPL4YBR170C SSU72P53538 206 aaPredicted RBP3.22□□□□□ -1.89
NPL4YBR170C HST4P53688 370 aa3.22□□□□□ -1.89
NPL4YBR170C RTC4P53850 401 aa3.22□□□□□ -1.89
NPL4YBR170C YLR460CP54007 376 aa3.22□□□□□ -1.89
NPL4YBR170C GRX8Q05926 109 aa3.22□□□□□ -1.89
NPL4YBR170C GGA1Q06336 557 aa3.22□□□□□ -1.89
NPL4YBR170C MDM32Q12171 622 aa3.22□□□□□ -1.89
NPL4YBR170C YHR214C-EQ8TGK0 99 aa3.22□□□□□ -1.89
NPL4YBR170C SGA1P08019 549 aa3.22□□□□□ -1.89
NPL4YBR170C RCN1P36054 211 aa3.22□□□□□ -1.89
NPL4YBR170C FES1P38260 290 aa3.22□□□□□ -1.89
NPL4YBR170C IRC22P40006 225 aa3.22□□□□□ -1.89
NPL4YBR170C YOR020W-AQ3E824 90 aa3.22□□□□□ -1.89
NPL4YBR170C YOL160WQ08321 113 aa3.21□□□□□ -1.9
NPL4YBR170C BBP1Q12365 385 aa3.21□□□□□ -1.9
NPL4YBR170C IGO2Q9P305 131 aa3.21□□□□□ -1.9
NPL4YBR170C CDC7P06243 507 aa3.2□□□□□ -1.9
NPL4YBR170C TAH1P25638 111 aaPredicted RBP3.2□□□□□ -1.9
NPL4YBR170C PTM1P32857 523 aa3.2□□□□□ -1.9
NPL4YBR170C COS8P38723 381 aa3.2□□□□□ -1.9
NPL4YBR170C YKE4P40544 346 aa3.2□□□□□ -1.9
NPL4YBR170C PFS2P42841 465 aaKnown RBP3.2□□□□□ -1.9
NPL4YBR170C JAC1P53193 184 aa3.2□□□□□ -1.9
NPL4YBR170C YGR050CP53231 118 aa3.2□□□□□ -1.9
NPL4YBR170C RSM10Q03201 203 aa3.2□□□□□ -1.9
NPL4YBR170C YMD8Q03697 442 aa3.2□□□□□ -1.9
NPL4YBR170C YOL024WQ08172 172 aa3.2□□□□□ -1.9
NPL4YBR170C RPL25P04456 142 aaKnown RBP3.19□□□□□ -1.9
NPL4YBR170C FCY2P17064 533 aa3.19□□□□□ -1.9
NPL4YBR170C UBC6P33296 250 aaPredicted RBP3.19□□□□□ -1.9
NPL4YBR170C YOX1P34161 385 aa3.19□□□□□ -1.9
NPL4YBR170C YKR041WP36134 250 aa3.19□□□□□ -1.9
NPL4YBR170C YBR063CP38083 404 aa3.19□□□□□ -1.9
NPL4YBR170C PDS1P40316 373 aaPredicted RBP3.19□□□□□ -1.9
NPL4YBR170C ECO1P43605 281 aa3.19□□□□□ -1.9
NPL4YBR170C LPP1Q04396 274 aa3.19□□□□□ -1.9
NPL4YBR170C CCH1P50077 2039 aa3.19□□□□□ -1.9
NPL4YBR170C RAD10P06838 210 aa3.19□□□□□ -1.9
NPL4YBR170C AME1P38313 324 aa3.19□□□□□ -1.9
NPL4YBR170C RMD6P39975 231 aa3.19□□□□□ -1.9
NPL4YBR170C FLC3P53121 802 aa3.19□□□□□ -1.9
NPL4YBR170C YNL184CP53876 108 aa3.19□□□□□ -1.9
NPL4YBR170C COG5P53951 403 aa3.19□□□□□ -1.9
NPL4YBR170C YLR036CQ07986 203 aa3.19□□□□□ -1.9
NPL4YBR170C YPR063CQ12160 140 aa3.19□□□□□ -1.9
NPL4YBR170C TDA8Q6B2U8 126 aa3.19□□□□□ -1.9
NPL4YBR170C HIS3P06633 220 aa3.18□□□□□ -1.9
NPL4YBR170C GRX2P17695 143 aaKnown RBP3.18□□□□□ -1.9
NPL4YBR170C TKL2P33315 681 aa3.18□□□□□ -1.9
NPL4YBR170C YGP1P38616 354 aaKnown RBP3.18□□□□□ -1.9
NPL4YBR170C FIS1P40515 155 aa3.18□□□□□ -1.9
NPL4YBR170C UBC12P52491 188 aa3.18□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 28.9 ms