RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 Q8NA96 180 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 ATL2Q8NHH9 583 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 VOPP1Q96AW1 172 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 VSX1Q9NZR4 365 aaPredicted RBP5.74□□□□□ -1.49
CD44-239ENST00000639002 TUBD1Q9UJT1 453 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 MYBBP1AQ9BQG0 1328 aaKnown RBP5.74□□□□□ -1.49
CD44-239ENST00000639002 FAM171A2A8MVW0 826 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 GPANK1O95872 356 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 SLC6A4P31645 630 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 KRTAP1-1Q07627 177 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 SLFN5Q08AF3 891 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 MPP3Q13368 585 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 CCDC142Q17RM4 750 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 SPDYE7PQ495Y7 208 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 ZNF362Q5T0B9 420 aaPredicted RBP5.73□□□□□ -1.49
CD44-239ENST00000639002 STRIP1Q5VSL9 837 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 FAM43AQ8N2R8 423 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 RNF31Q96EP0 1072 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 REXO4Q9GZR2 422 aaKnown RBP5.73□□□□□ -1.49
CD44-239ENST00000639002 UNKLQ9H9P5 680 aaKnown RBP5.73□□□□□ -1.49
CD44-239ENST00000639002 GALNT9Q9HCQ5 603 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 KCNE5Q9UJ90 142 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 INTUQ9ULD6 942 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 PRKAB1Q9Y478 270 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 NOX1Q9Y5S8 564 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 COX11Q9Y6N1 276 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 WASHC2AQ641Q2 1341 aa5.73□□□□□ -1.49
CD44-239ENST00000639002 TEX33O43247 280 aa5.72□□□□□ -1.49
CD44-239ENST00000639002 CLSTN1O94985 981 aa5.72□□□□□ -1.49
CD44-239ENST00000639002 FDXRP22570 491 aa5.72□□□□□ -1.49
CD44-239ENST00000639002 CXCR5P32302 372 aa5.72□□□□□ -1.49
CD44-239ENST00000639002 JADE3Q92613 823 aa5.72□□□□□ -1.49
CD44-239ENST00000639002 PTGFRNQ9P2B2 879 aa5.72□□□□□ -1.49
CD44-239ENST00000639002 TNFRSF18Q9Y5U5 241 aa5.72□□□□□ -1.49
CD44-239ENST00000639002 MGST3O14880 152 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 PCDHGA12O60330 932 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 SBK3P0C264 359 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 SIM1P81133 766 aaPredicted RBP5.71□□□□□ -1.5
CD44-239ENST00000639002 MXRA7P84157 204 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 TARDBPQ13148 414 aaKnown RBP eCLIP5.71□□□□□ -1.5
CD44-239ENST00000639002 ZNF169Q14929 603 aaPredicted RBP5.71□□□□□ -1.5
CD44-239ENST00000639002 COLEC12Q5KU26 742 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 DACT2Q5SW24 774 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 FBXO42Q6P3S6 717 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 Q6ZNX1 250 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 FITM2Q8N6M3 262 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 C1orf162Q8NEQ5 155 aaPredicted RBP5.71□□□□□ -1.5
CD44-239ENST00000639002 NUP133Q8WUM0 1156 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 RAB24Q969Q5 203 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 MANSC1Q9H8J5 431 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 SLC5A4Q9NY91 659 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 FOXJ2Q9P0K8 574 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 TESQ9UGI8 421 aaKnown RBP5.71□□□□□ -1.5
CD44-239ENST00000639002 PCDHGA9Q9Y5G4 932 aaKnown RBP5.71□□□□□ -1.5
CD44-239ENST00000639002 PCDHGA8Q9Y5G5 932 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 PCDHGA7Q9Y5G6 932 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 PCDHGA6Q9Y5G7 932 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 PCDHGA3Q9Y5H0 932 aa5.71□□□□□ -1.5
CD44-239ENST00000639002 CDHR4A6H8M9 788 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 C5AR1P21730 350 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 IARSP41252 1262 aaKnown RBP5.7□□□□□ -1.5
CD44-239ENST00000639002 IL12RB1P42701 662 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 VAV2P52735 878 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 CTXN1P60606 82 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 RHOT1Q8IXI2 618 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 C7orf25Q9BPX7 421 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 PUS7LQ9H0K6 701 aaKnown RBP5.7□□□□□ -1.5
CD44-239ENST00000639002 INSL6Q9Y581 213 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 PCDHA13Q9Y5I0 950 aa5.7□□□□□ -1.5
CD44-239ENST00000639002 ARHGEF17Q96PE2 2063 aaPredicted RBP5.7□□□□□ -1.5
CD44-239ENST00000639002 MYADML2A6NDP7 307 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 FZD9O00144 591 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 MASP2O00187 686 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 KIAA0391O15091 583 aaKnown RBP5.69□□□□□ -1.5
CD44-239ENST00000639002 NDUFS2O75306 463 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 FCER1AP12319 257 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 EDNRBP24530 442 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 RARRES1P49788 294 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 C21orf58P58505 322 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 GEN1Q17RS7 908 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 PGM2L1Q6PCE3 622 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 RD3Q7Z3Z2 195 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 TBC1D15Q8TC07 691 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 SLC9A6Q92581 669 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 DMRTA2Q96SC8 542 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 KRTAP9-8Q9BYQ0 159 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 IPPQ9Y573 584 aa5.69□□□□□ -1.5
CD44-239ENST00000639002 ALAS1P13196 640 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 CLUL1Q15846 466 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 FLYWCH1Q4VC44 716 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 FOXR2Q6PJQ5 311 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 AMOTL1Q8IY63 956 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 LNX2Q8N448 690 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 IFI44Q8TCB0 444 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 SSH1Q8WYL5 1049 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 FAXDC2Q96IV6 333 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 PDLIM2Q96JY6 352 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 PNKPQ96T60 521 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 AIFM2Q9BRQ8 373 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 LRFN3Q9BTN0 628 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms