RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 APOBEC2Q9Y235 224 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ZMYM4Q5VZL5 1548 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 C2orf81A6NN90 581 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 JAK2O60674 1132 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CSE1LP55060 971 aaKnown RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 MAPK8IP2Q13387 824 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CCNG2Q16589 344 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 BBS9Q3SYG4 887 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 ANKRD13CQ8N6S4 541 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CALML6Q8TD86 181 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 MCOLN3Q8TDD5 553 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 RASGRP4Q8TDF6 673 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CAPN10Q9HC96 672 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 STOML1Q9UBI4 398 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 HEATR9A2RTY3 570 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 F5H6K3 240 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 LSP1P33241 339 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 KLRC3Q07444 240 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PPIL2Q13356 520 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 MAPRE2Q15555 327 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 TTC23Q5W5X9 447 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 ERO1BQ86YB8 467 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 REM2Q8IYK8 340 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 THAP9Q9H5L6 903 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 FBXL5Q9UKA1 691 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 EPN1Q9Y6I3 576 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 SPTLC1O15269 473 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 KCNQ2O43526 872 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 FYNP06241 537 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 ENO2P09104 434 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 FAM200BP0CF97 657 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 SOAT1P35610 550 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CACNB1Q02641 598 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 BTG3Q14201 252 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 KLHL38Q2WGJ6 581 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 LUZP2Q86TE4 346 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 ADGRF4Q8IZF3 695 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 KRT35Q92764 455 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PABPC5Q96DU9 382 aaKnown RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PLEKHA4Q9H4M7 779 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PRDM10Q9NQV6 1147 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 VPS51Q9UID3 782 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CRLS1Q9UJA2 301 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 SNX5Q9Y5X3 404 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF839A8K0R7 811 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 MMP1P03956 469 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 TMC2Q8TDI7 906 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 BRD8Q9H0E9 1235 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 TUFT1Q9NNX1 390 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 NSMCE4AQ9NXX6 385 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PKD2L2Q9NZM6 624 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 RNF14Q9UBS8 474 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 NAGPAQ9UK23 515 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 FAM107AO95990 144 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 USP11P51784 963 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 BCAR1P56945 870 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 SEMA3FQ13275 785 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 IKBKEQ14164 716 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DCAF6Q58WW2 860 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 ALS2CLQ60I27 953 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 EFCAB12Q6NXP0 572 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PRMT7Q9NVM4 692 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 ANGPTL2Q9UKU9 493 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CDC42BPAQ5VT25 1732 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CLASP2O75122 1294 aaKnown RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PYGMP11217 842 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 MZF1P28698 734 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 NCAPHQ15003 741 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 XKR3Q5GH77 459 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 RASEFQ8IZ41 740 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 SEPT1Q8WYJ6 367 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PIK3R5Q8WYR1 880 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CEP95Q96GE4 821 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 OSBPL9Q96SU4 736 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 MTG1Q9BT17 334 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 WDR41Q9HAD4 459 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CHST12Q9NRB3 414 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 MRGBPQ9NV56 204 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 TNFSF13BQ9Y275 285 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 MAP2P11137 1827 aaKnown RBP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 RPTORQ8N122 1335 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 A0A1B0GW55 424 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DUX4L2P0CJ85 424 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DUX4L3P0CJ86 424 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DUX4L4P0CJ87 422 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DUX4L5P0CJ88 424 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DUX4L6P0CJ89 424 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DUX4L7P0CJ90 424 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 TNNI3P19429 210 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 NDUFV1P49821 464 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DMC1Q14565 340 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF248Q8NDW4 579 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CNPPD1Q9BV87 410 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 UBXN6Q9BZV1 441 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 CD274Q9NZQ7 290 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 SPASTQ9UBP0 616 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 DUX4Q9UBX2 424 aa6.44□□□□□ -1.38
SCN1A-217ENST00000637988 AXIN2Q9Y2T1 843 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms