RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZBTB41Q5SVQ8 909 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 PDILTQ8N807 584 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 TSPAN18Q96SJ8 248 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 SCAND2PQ9GZW5 306 aaPredicted RBP20.97■□□□□ 0.95
CLN3-260ENST00000637578 KBTBD4Q9NVX7 518 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 CPSF3Q9UKF6 684 aaKnown RBP20.97■□□□□ 0.95
CLN3-260ENST00000637578 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.97■□□□□ 0.95
CLN3-260ENST00000637578 PLXNA3P51805 1871 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 VWA8A3KMH1 1905 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 ANKRD63C9JTQ0 380 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 SPATA31D3P0C874 917 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 BRCC3P46736 316 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 SLFN12LQ6IEE8 588 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 SPATA31D4Q6ZUB0 917 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 EDAQ92838 391 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 CUEDC2Q9H467 287 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 GDPD2Q9HCC8 539 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 ZDHHC7Q9NXF8 308 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 MTRRQ9UBK8 725 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 PCDHA7Q9UN72 937 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 BACE2Q9Y5Z0 518 aa20.96■□□□□ 0.95
CLN3-260ENST00000637578 CCDC195A0A1B0GUA6 201 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 FAM86C2PA6NEL3 165 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 LACTBL1A8MY62 500 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 PRR33A8MZF0 331 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 C2CD4DB7Z1M9 353 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 ADAM12O43184 909 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 CYP3A5P20815 502 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 GLYCTKQ8IVS8 523 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 KREMEN2Q8NCW0 462 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 ZNF707Q96C28 371 aaPredicted RBP20.95■□□□□ 0.94
CLN3-260ENST00000637578 MSTO1Q9BUK6 570 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 MRPL44Q9H9J2 332 aaKnown RBP20.95■□□□□ 0.94
CLN3-260ENST00000637578 FBXW11Q9UKB1 542 aa20.95■□□□□ 0.94
CLN3-260ENST00000637578 SPDYE4A6NLX3 237 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 RFPL2O75678 378 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 TKTP29401 623 aaKnown RBP20.94■□□□□ 0.94
CLN3-260ENST00000637578 LRPAP1P30533 357 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 POU5F1Q01860 360 aaKnown RBP20.94■□□□□ 0.94
CLN3-260ENST00000637578 RAB33AQ14088 237 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 ANKS3Q6ZW76 656 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 CD302Q8IX05 232 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 ZDHHC14Q8IZN3 488 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 TNMDQ9H2S6 317 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 RPF1Q9H9Y2 349 aaKnown RBP20.94■□□□□ 0.94
CLN3-260ENST00000637578 TUBGCP4Q9UGJ1 667 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 TRIOO75962 3097 aa20.94■□□□□ 0.94
CLN3-260ENST00000637578 TISP43B9A030 160 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 I3L4J1 428 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 SYN3O14994 580 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 TBC1D4O60343 1298 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 ZMYND10O75800 440 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 COL9A1P20849 921 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 ADSSP30520 456 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 PPP2R3AQ06190 1150 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 KCNA1Q09470 495 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 MRPL58Q14197 206 aaKnown RBP20.93■□□□□ 0.94
CLN3-260ENST00000637578 L1TD1Q5T7N2 865 aaKnown RBP20.93■□□□□ 0.94
CLN3-260ENST00000637578 CNNM4Q6P4Q7 775 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 RSPO2Q6UXX9 243 aaPredicted RBP20.93■□□□□ 0.94
CLN3-260ENST00000637578 SUSD3Q96L08 255 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 PANK4Q9NVE7 773 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 UBQLN1Q9UMX0 589 aaKnown RBP20.93■□□□□ 0.94
CLN3-260ENST00000637578 MTCL1Q9Y4B5 1905 aaKnown RBP20.93■□□□□ 0.94
CLN3-260ENST00000637578 PDCD11Q14690 1871 aaKnown RBP20.93■□□□□ 0.94
CLN3-260ENST00000637578 IDEP14735 1019 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 SP100P23497 879 aaPredicted RBP20.93■□□□□ 0.94
CLN3-260ENST00000637578 OR1D2P34982 312 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 CASP5P51878 434 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 ZXDAP98168 799 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 SPAG1Q07617 926 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 PLCD3Q8N3E9 789 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 IQUBQ8NA54 791 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 KIF12Q96FN5 646 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 PRKD2Q9BZL6 878 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 LRRC27Q9C0I9 530 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 IKZF4Q9H2S9 585 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 WDR6Q9NNW5 1121 aaKnown RBP20.93■□□□□ 0.94
CLN3-260ENST00000637578 TBC1D7Q9P0N9 293 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 PCDHB13Q9Y5F0 798 aa20.93■□□□□ 0.94
CLN3-260ENST00000637578 MYBP10242 640 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 ALCAMQ13740 583 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 POSTNQ15063 836 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 PTPN21Q16825 1174 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 ADALQ6DHV7 355 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 SLC8B1Q6J4K2 584 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 CCDC149Q6ZUS6 474 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 DENND4AQ7Z401 1863 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 TMEM130Q8N3G9 435 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 STAMQ92783 540 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 FGFBP2Q9BYJ0 223 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 TRIM9Q9C026 710 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 AGO2Q9UKV8 859 aaKnown RBP20.92■□□□□ 0.94
CLN3-260ENST00000637578 EXOC7Q9UPT5 735 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 NUB1Q9Y5A7 615 aa20.92■□□□□ 0.94
CLN3-260ENST00000637578 AARSP49588 968 aaKnown RBP eCLIP20.91■□□□□ 0.94
CLN3-260ENST00000637578 SPATA1Q5VX52 437 aa20.91■□□□□ 0.94
CLN3-260ENST00000637578 RESP18Q5W5W9 173 aa20.91■□□□□ 0.94
CLN3-260ENST00000637578 CRELD2Q6UXH1 353 aaPredicted RBP20.91■□□□□ 0.94
CLN3-260ENST00000637578 RTL10Q7L3V2 364 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms