RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 TOM1L1O75674 476 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 B3GAT3O94766 335 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 KIF4AO95239 1232 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 GLUD1P00367 558 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 STAT6P42226 847 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 CLCN4P51793 760 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 NCKAP1LP55160 1127 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 DSG1Q02413 1049 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 NOLC1Q14978 699 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLN3-257ENST00000637110 SEZ6Q53EL9 994 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 FAM171A1Q5VUB5 890 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 KANK3Q6NY19 840 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 TMC5Q6UXY8 1006 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 ZPBP2Q6X784 338 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 CCDC73Q6ZRK6 1079 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 SV2BQ7L1I2 683 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 PALB2Q86YC2 1186 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 DCLK2Q8N568 766 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 LRRC15Q8TF66 581 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 SECISBP2LQ93073 1101 aaKnown RBP12.7□□□□□ -0.38
CLN3-257ENST00000637110 KCNK12Q9HB15 430 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 PTPRHQ9HD43 1115 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 STK17AQ9UEE5 414 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 CDV3Q9UKY7 258 aaKnown RBP12.7□□□□□ -0.38
CLN3-257ENST00000637110 CFAP47Q6ZTR5 3102 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 SMIM28A0A1B0GU29 152 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 PRR5-ARHGAP8B1AHC4 643 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 HNRNPDLO14979 420 aaKnown RBP12.69□□□□□ -0.38
CLN3-257ENST00000637110 SPTLC2O15270 562 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 LILRB3O75022 631 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 SPATA31D3P0C874 917 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 SP9P0CG40 484 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 PDIA4P13667 645 aaKnown RBP12.69□□□□□ -0.38
CLN3-257ENST00000637110 RPL17P18621 184 aaKnown RBP12.69□□□□□ -0.38
CLN3-257ENST00000637110 NMT1P30419 496 aaKnown RBP12.69□□□□□ -0.38
CLN3-257ENST00000637110 CLCNKBP51801 687 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 ARHGAP8P85298 464 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 CREMQ03060 361 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 ELAVL2Q12926 359 aaKnown RBP12.69□□□□□ -0.38
CLN3-257ENST00000637110 DCLRE1AQ6PJP8 1040 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 PRSS55Q6UWB4 352 aaPredicted RBP12.69□□□□□ -0.38
CLN3-257ENST00000637110 SPATA31D4Q6ZUB0 917 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 PDILTQ8N807 584 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 UROC1Q96N76 676 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 TTPALQ9BTX7 342 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 SFXN1Q9H9B4 322 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 GOLGA2P5Q9HBQ8 144 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 MAN1C1Q9NR34 630 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLN3-257ENST00000637110 SLC38A7Q9NVC3 462 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 NCDNQ9UBB6 729 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 DPP7Q9UHL4 492 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 TBX20Q9UMR3 447 aa12.69□□□□□ -0.38
CLN3-257ENST00000637110 CHD8Q9HCK8 2581 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 F13A1P00488 732 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 ZSCAN22P10073 491 aaPredicted RBP12.68□□□□□ -0.38
CLN3-257ENST00000637110 IDEP14735 1019 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 SCP2P22307 547 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 PROZP22891 400 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 ABCD1P33897 745 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 NASPP49321 788 aaPredicted RBP12.68□□□□□ -0.38
CLN3-257ENST00000637110 LMNB2Q03252 620 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 C1orf210Q8IVY1 113 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 RNF168Q8IYW5 571 aaPredicted RBP12.68□□□□□ -0.38
CLN3-257ENST00000637110 LINC00301Q8NCQ3 95 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 DDX12PQ92771 950 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 FAM212AQ96EL1 285 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 DDX27Q96GQ7 796 aaKnown RBP12.68□□□□□ -0.38
CLN3-257ENST00000637110 CHAMP1Q96JM3 812 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 PPP1R10Q96QC0 940 aaKnown RBP12.68□□□□□ -0.38
CLN3-257ENST00000637110 RXFP1Q9HBX9 757 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 CHST7Q9NS84 486 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 NUB1Q9Y5A7 615 aa12.68□□□□□ -0.38
CLN3-257ENST00000637110 PODXLO00592 558 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 ABLIM1O14639 778 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 TRAPPC3O43617 180 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 PPP6R2O75170 966 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 CFHP08603 1231 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 CLTAP09496 248 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 ZNF131P52739 623 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 ATXN1P54253 815 aaKnown RBP12.67□□□□□ -0.38
CLN3-257ENST00000637110 MCL1Q07820 350 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 NAB2Q15742 525 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 PSMD5Q16401 504 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 ZC2HC1CQ53FD0 456 aaPredicted RBP12.67□□□□□ -0.38
CLN3-257ENST00000637110 RTP2Q5QGT7 225 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 VARS2Q5ST30 1063 aaKnown RBP12.67□□□□□ -0.38
CLN3-257ENST00000637110 PDXDC1Q6P996 788 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 SFR1Q86XK3 245 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 SUMF1Q8NBK3 374 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 RTKNQ9BST9 563 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 MSTO1Q9BUK6 570 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 MRPL44Q9H9J2 332 aaKnown RBP12.67□□□□□ -0.38
CLN3-257ENST00000637110 TBC1D17Q9HA65 648 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 PIDD1Q9HB75 910 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 TBC1D7Q9P0N9 293 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 SIT1Q9Y3P8 196 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 ATRXP46100 2492 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 TRIP11Q15643 1979 aa12.67□□□□□ -0.38
CLN3-257ENST00000637110 CACNA1IQ9P0X4 2223 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms