RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 CXorf38Q8TB03 319 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 HELQQ8TDG4 1101 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 ANP32BQ92688 251 aaKnown RBP22.21■■□□□ 1.15
CLN3-245ENST00000636172 INTS2Q9H0H0 1204 aaKnown RBP22.21■■□□□ 1.15
CLN3-245ENST00000636172 SIX4Q9UIU6 781 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 LRFN2Q9ULH4 789 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 UBQLN1Q9UMX0 589 aaKnown RBP22.21■■□□□ 1.15
CLN3-245ENST00000636172 INPP5FQ9Y2H2 1132 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 SLC9A1P19634 815 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 PIK3CAP42336 1068 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 SOX4Q06945 474 aaPredicted RBP22.21■■□□□ 1.15
CLN3-245ENST00000636172 NAB2Q15742 525 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 SPECC1LQ69YQ0 1117 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 DPY19L2P1Q6NXN4 242 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 ZNF365Q70YC5 407 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 OTOP2Q7RTS6 562 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.21■■□□□ 1.15
CLN3-245ENST00000636172 EHBP1Q8NDI1 1231 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 RAB20Q9NX57 234 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 DPP3Q9NY33 737 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 ITIH6Q6UXX5 1313 aa22.2■■□□□ 1.15
CLN3-245ENST00000636172 PHACTR2O75167 634 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 THP07101 528 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 APBA1Q02410 837 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 NCOA4Q13772 614 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 TRIM65Q6PJ69 517 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 TMC6Q7Z403 805 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 BEST2Q8NFU1 509 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 PCMTD1Q96MG8 357 aaPredicted RBP22.2■■□□□ 1.14
CLN3-245ENST00000636172 LSM14BQ9BX40 385 aaKnown RBP22.2■■□□□ 1.14
CLN3-245ENST00000636172 SIX2Q9NPC8 291 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 RNF216Q9NWF9 866 aaPredicted RBP22.2■■□□□ 1.14
CLN3-245ENST00000636172 ITGA11Q9UKX5 1188 aa22.2■■□□□ 1.14
CLN3-245ENST00000636172 PTPRSQ13332 1948 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 CST3P01034 146 aaPredicted RBP22.19■■□□□ 1.14
CLN3-245ENST00000636172 POMCP01189 267 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 FGBP02675 491 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 ITGB3P05106 788 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 CYP3A5P20815 502 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 GATMP50440 423 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 DEFB103AP81534 67 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 GRIK3Q13003 919 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 NOMO2Q5JPE7 1267 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 TMEM240Q5SV17 173 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 PSRC1Q6PGN9 363 aaPredicted RBP22.19■■□□□ 1.14
CLN3-245ENST00000636172 LBHD1Q9BQE6 289 aaPredicted RBP22.19■■□□□ 1.14
CLN3-245ENST00000636172 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.19■■□□□ 1.143e-6■□□□□ 10.1
CLN3-245ENST00000636172 FAM207AQ9NSI2 230 aaPredicted RBP22.19■■□□□ 1.14
CLN3-245ENST00000636172 SLC38A7Q9NVC3 462 aa22.19■■□□□ 1.14
CLN3-245ENST00000636172 FNDC1Q4ZHG4 1894 aaPredicted RBP22.18■■□□□ 1.14
CLN3-245ENST00000636172 EPHB6O15197 1021 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 HOXA2O43364 376 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 XPOTO43592 962 aaKnown RBP22.18■■□□□ 1.14
CLN3-245ENST00000636172 AMHP03971 560 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 POLR2BP30876 1174 aaKnown RBP22.18■■□□□ 1.14
CLN3-245ENST00000636172 TOP1MTQ969P6 601 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 CASD1Q96PB1 797 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 PI4K2AQ9BTU6 479 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 GOLGA2P5Q9HBQ8 144 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.18■■□□□ 1.146e-9■■■■■ 134.6
CLN3-245ENST00000636172 NR2E3Q9Y5X4 410 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 COL4A6Q14031 1691 aa22.18■■□□□ 1.14
CLN3-245ENST00000636172 NOL4O94818 638 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 UPP2O95045 317 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 KRT19P08727 400 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 MYL6P60660 151 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 TRPC3Q13507 836 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 DRC7Q8IY82 874 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 URGCPQ8TCY9 931 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 ELMO3Q96BJ8 720 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 PDLIM2Q96JY6 352 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 PLCB1Q9NQ66 1216 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 CEP290O15078 2479 aa22.17■■□□□ 1.14
CLN3-245ENST00000636172 PRPF38BQ5VTL8 546 aaKnown RBP22.16■■□□□ 1.14
CLN3-245ENST00000636172 C9orf57Q5W0N0 161 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 TMCO2Q7Z6W1 182 aaPredicted RBP22.16■■□□□ 1.14
CLN3-245ENST00000636172 ABI1Q8IZP0 508 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 SPC24Q8NBT2 197 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 NEK11Q8NG66 645 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 TTYH3Q9C0H2 523 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 XYLT2Q9H1B5 865 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 GANQ9H2C0 597 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 TBC1D13Q9NVG8 400 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 AGAP1Q9UPQ3 857 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 SCN1AP35498 2009 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 ANO9A1A5B4 782 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 PPEF2O14830 753 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 ASS1P00966 412 aaKnown RBP22.16■■□□□ 1.14
CLN3-245ENST00000636172 LRPAP1P30533 357 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 KCNJ6P48051 423 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 RBP5P82980 135 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 LRMPQ12912 555 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 TBX2Q13207 712 aaPredicted RBP22.16■■□□□ 1.14
CLN3-245ENST00000636172 KLHDC7AQ5VTJ3 777 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 KANSL3Q9P2N6 904 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 CACNG4Q9UBN1 327 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 APEX2Q9UBZ4 518 aa22.16■■□□□ 1.14
CLN3-245ENST00000636172 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.16■■□□□ 1.14
CLN3-245ENST00000636172 ZBBXA8MT70 800 aa22.15■■□□□ 1.14
CLN3-245ENST00000636172 B4GALT3O60512 393 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms