RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CDC25AP30304 524 aa20.15■□□□□ 0.82
CLN3-241ENST00000635861 MCM2P49736 904 aa20.15■□□□□ 0.82
CLN3-241ENST00000635861 SOX4Q06945 474 aaPredicted RBP20.15■□□□□ 0.82
CLN3-241ENST00000635861 NOLC1Q14978 699 aaKnown RBP eCLIP20.15■□□□□ 0.82
CLN3-241ENST00000635861 PABPC1LQ4VXU2 614 aaKnown RBP20.15■□□□□ 0.82
CLN3-241ENST00000635861 FGF14Q92915 247 aa20.15■□□□□ 0.82
CLN3-241ENST00000635861 CDK5RAP3Q96JB5 506 aa20.15■□□□□ 0.82
CLN3-241ENST00000635861 AK8Q96MA6 479 aa20.15■□□□□ 0.82
CLN3-241ENST00000635861 MAFFQ9ULX9 164 aa20.15■□□□□ 0.82
CLN3-241ENST00000635861 PATJQ8NI35 1801 aa20.15■□□□□ 0.82
CLN3-241ENST00000635861 CACNA1IQ9P0X4 2223 aa20.14■□□□□ 0.82
CLN3-241ENST00000635861 ARHGEF37A1IGU5 675 aa20.14■□□□□ 0.81
CLN3-241ENST00000635861 H3BQV1 296 aa20.14■□□□□ 0.81
CLN3-241ENST00000635861 ABLIM3O94929 683 aa20.14■□□□□ 0.81
CLN3-241ENST00000635861 OSTNP61366 133 aa20.14■□□□□ 0.81
CLN3-241ENST00000635861 RSPO2Q6UXX9 243 aaPredicted RBP20.14■□□□□ 0.81
CLN3-241ENST00000635861 TMEM161BQ8NDZ6 487 aa20.14■□□□□ 0.81
CLN3-241ENST00000635861 ZMAT2Q96NC0 199 aaKnown RBP20.14■□□□□ 0.81
CLN3-241ENST00000635861 SEMA4AQ9H3S1 761 aa20.14■□□□□ 0.81
CLN3-241ENST00000635861 LARSQ9P2J5 1176 aaKnown RBP20.14■□□□□ 0.81
CLN3-241ENST00000635861 NUB1Q9Y5A7 615 aa20.14■□□□□ 0.81
CLN3-241ENST00000635861 GVINP1Q7Z2Y8 2422 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 TBC1D4O60343 1298 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 ATF2P15336 505 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 ELF1P32519 619 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 BRCC3P46736 316 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 SLC12A3P55017 1021 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 STARD6P59095 220 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 NTHL1P78549 312 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 PFKPQ01813 784 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 ROR1Q01973 937 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 MRPL58Q14197 206 aaKnown RBP20.13■□□□□ 0.81
CLN3-241ENST00000635861 KYAT1Q16773 422 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 VARS2Q5ST30 1063 aaKnown RBP20.13■□□□□ 0.81
CLN3-241ENST00000635861 TPGS2Q68CL5 300 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 PARM1Q6UWI2 310 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 ASCL5Q7RTU5 278 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 TMX3Q96JJ7 454 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 PNMA5Q96PV4 448 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 PLEKHA5Q9HAU0 1116 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 GDE1Q9NZC3 331 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 DNMT3BQ9UBC3 853 aaKnown RBP20.13■□□□□ 0.81
CLN3-241ENST00000635861 ODF2LQ9ULJ1 636 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 SIT1Q9Y3P8 196 aa20.13■□□□□ 0.81
CLN3-241ENST00000635861 VWA3AA6NCI4 1184 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 CLDN3O15551 220 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 LRG1P02750 347 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 MAPTP10636 758 aaKnown RBP20.12■□□□□ 0.81
CLN3-241ENST00000635861 GJB2P29033 226 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 PRKCQQ04759 706 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 MCL1Q07820 350 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 TMEM119Q4V9L6 283 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 FRMD5Q7Z6J6 570 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 TCEAL8Q8IYN2 117 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 APPL2Q8NEU8 664 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 SUSD3Q96L08 255 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 UPF2Q9HAU5 1272 aaKnown RBP20.12■□□□□ 0.81
CLN3-241ENST00000635861 MRPS23Q9Y3D9 190 aaKnown RBP20.12■□□□□ 0.81
CLN3-241ENST00000635861 ANK1P16157 1881 aa20.12■□□□□ 0.81
CLN3-241ENST00000635861 SFI1A8K8P3 1242 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 MICAL2O94851 1124 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 BMP15O95972 392 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 PLA2G4BP0C869 781 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 PTPN2P17706 415 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 IGFBP6P24592 240 aaPredicted RBP20.11■□□□□ 0.81
CLN3-241ENST00000635861 ABCD1P33897 745 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 NCKAP1LP55160 1127 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 ZRSR1Q15695 479 aaKnown RBP20.11■□□□□ 0.81
CLN3-241ENST00000635861 NPAS3Q8IXF0 933 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 ITFG1Q8TB96 612 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 TSPAN18Q96SJ8 248 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 OXCT2Q9BYC2 517 aaPredicted RBP20.11■□□□□ 0.81
CLN3-241ENST00000635861 ANKFY1Q9P2R3 1169 aa20.11■□□□□ 0.81
CLN3-241ENST00000635861 WDR27A2RRH5 827 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 I3L4J1 428 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 GPC5P78333 572 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 SLC10A6Q3KNW5 377 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 ZNF280DQ6N043 979 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 PJA1Q8NG27 643 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 CALML4Q96GE6 196 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 ZBTB45Q96K62 511 aaPredicted RBP20.1■□□□□ 0.81
CLN3-241ENST00000635861 OSBPL6Q9BZF3 934 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 HCFC1R1Q9NWW0 138 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 DLGAP2Q9P1A6 1054 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.1■□□□□ 0.81
CLN3-241ENST00000635861 FRYLO94915 3013 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 PRRG1O14668 218 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 ZNF197O14709 1029 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 XPOTO43592 962 aaKnown RBP20.1■□□□□ 0.81
CLN3-241ENST00000635861 ECI2O75521 394 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 RHOP08100 348 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 CLTAP09496 248 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 HARSP12081 509 aaKnown RBP20.1■□□□□ 0.81
CLN3-241ENST00000635861 MCM4P33991 863 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 BORCS6Q96GS4 357 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 RPP25Q9BUL9 199 aaKnown RBP20.1■□□□□ 0.81
CLN3-241ENST00000635861 DDX23Q9BUQ8 820 aaKnown RBP20.1■□□□□ 0.81
CLN3-241ENST00000635861 FBXL5Q9UKA1 691 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 TCHHQ07283 1943 aa20.1■□□□□ 0.81
CLN3-241ENST00000635861 CYP3A5P20815 502 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms