RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 KLC2Q9H0B6 622 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 TMEM8AQ9HCN3 771 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 ZC3H4Q9UPT8 1303 aaKnown RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 CCDC160A6NGH7 325 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 AKAP3O75969 853 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 STAG3L1P0CL83 205 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 UBA1P22314 1058 aaKnown RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 EPHB4P54760 987 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 SESN2P58004 480 aaPredicted RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 FOXD4Q12950 439 aaPredicted RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 PGBD3Q8N328 593 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 LRRC8CQ8TDW0 803 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 DHX38Q92620 1227 aaKnown RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 KLRG1Q96E93 195 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 TAF1DQ9H5J8 278 aaPredicted RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 AMACRQ9UHK6 382 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 STK38LQ9Y2H1 464 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 FOXN3O00409 490 aaPredicted RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 SLC16A3O15427 465 aaKnown RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 ELNP15502 786 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 TPI1P60174 286 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 SP3Q02447 781 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 FSCN1Q16658 493 aaKnown RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 ZNF484Q5JVG2 852 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 CATSPERGQ6ZRH7 1159 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 BZW1Q7L1Q6 419 aaKnown RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 CCDC60Q8IWA6 550 aaPredicted RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 YAF2Q8IY57 180 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 SHCBP1Q8NEM2 672 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 IFT43Q96FT9 208 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 OSBPL9Q96SU4 736 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 TINF2Q9BSI4 451 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 AGXT2Q9BYV1 514 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 SLC38A7Q9NVC3 462 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 PARVAQ9NVD7 372 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 DPP3Q9NY33 737 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 SNTG2Q9NY99 539 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 IP6K2Q9UHH9 426 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 NOVA2Q9UNW9 492 aaKnown RBP10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 SYNGAP1Q96PV0 1343 aa10.73□□□□□ -0.69
SMARCA1-205ENST00000617310 ZNF185O15231 689 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 SLITRK3O94933 977 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 RAP1GAPP47736 663 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 PPIL2Q13356 520 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 KRT33BQ14525 404 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 ZNF235Q14590 738 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 CENPUQ71F23 418 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 REPS2Q8NFH8 660 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 DNERQ8NFT8 737 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 SCFD1Q8WVM8 642 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 MS4A14Q96JA4 679 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 VPS33BQ9H267 617 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 PLEKHA5Q9HAU0 1116 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 UBQLN1Q9UMX0 589 aaKnown RBP10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 PCDHB2Q9Y5E7 798 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 TOPAZ1Q8N9V7 1692 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 EIF3CLB5ME19 914 aaKnown RBP10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 RASGRF2O14827 1237 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 KIAA0391O15091 583 aaKnown RBP10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 NCAM1P13591 858 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 ACAT1P24752 427 aaKnown RBP10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 CCL23P55773 120 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 RCN2Q14257 317 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 RBBP5Q15291 538 aaKnown RBP10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 SLC18A3Q16572 532 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 RAD9BQ6WBX8 426 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 OTOP1Q7RTM1 612 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 PPM1NQ8N819 430 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 FAM71BQ8TC56 605 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 RNPC3Q96LT9 517 aaKnown RBP10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 EIF3CQ99613 913 aaKnown RBP10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 ABCB6Q9NP58 842 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 CYP39A1Q9NYL5 469 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 HES2Q9Y543 173 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 ANKRD26Q9UPS8 1709 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 USP54Q70EL1 1684 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 ARHGAP42A6NI28 874 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 GPR182O15218 404 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 ATP9AO75110 1047 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 EGFRP00533 1210 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 GYPCP04921 128 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 NAMPTP43490 491 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 MYL6P60660 151 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 APBA1Q02410 837 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 KCNA1Q09470 495 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 KYAT1Q16773 422 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 GOLGA7BQ2TAP0 167 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 C10orf120Q5SQS8 335 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 TRIM72Q6ZMU5 477 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 TTC39CQ8N584 583 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 DEPDC1BQ8WUY9 529 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 PGLYRP2Q96PD5 576 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 TMEM39AQ9NV64 488 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 KBTBD4Q9NVX7 518 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 PTPRZ1P23471 2315 aaPredicted RBP10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 KRT10P13645 584 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 FLT3LGP49771 235 aa10.72□□□□□ -0.69
SMARCA1-205ENST00000617310 NOGQ13253 232 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms