RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TARS2Q9BW92 718 aaKnown RBP20.75■□□□□ 0.91
CDX1-202ENST00000616154 KMT5AQ9NQR1 393 aa20.75■□□□□ 0.91
CDX1-202ENST00000616154 DLGAP2Q9P1A6 1054 aa20.75■□□□□ 0.91
CDX1-202ENST00000616154 KCNH3Q9ULD8 1083 aa20.75■□□□□ 0.91
CDX1-202ENST00000616154 ZNF292O60281 2723 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 VWA3AA6NCI4 1184 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 I3L4J1 428 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 ABLIM1O14639 778 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 KCNE1P15382 129 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 SYT1P21579 422 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 STARD6P59095 220 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 OSTNP61366 133 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 GPC5P78333 572 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 TMEM119Q4V9L6 283 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 PABPC1LQ4VXU2 614 aaKnown RBP20.74■□□□□ 0.91
CDX1-202ENST00000616154 ZMAT2Q96NC0 199 aaKnown RBP20.74■□□□□ 0.91
CDX1-202ENST00000616154 TIPINQ9BVW5 301 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 HCFC1R1Q9NWW0 138 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 DNMT3BQ9UBC3 853 aaKnown RBP20.74■□□□□ 0.91
CDX1-202ENST00000616154 SIT1Q9Y3P8 196 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 MORC2Q9Y6X9 1032 aaPredicted RBP20.74■□□□□ 0.91
CDX1-202ENST00000616154 WDR87Q6ZQQ6 2873 aa20.74■□□□□ 0.91
CDX1-202ENST00000616154 CACNA1IQ9P0X4 2223 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 PODXLO00592 558 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 GUCY2CP25092 1073 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 SLC8B1Q6J4K2 584 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 MPZL3Q6UWV2 235 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 NPAS3Q8IXF0 933 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 SHDQ96IW2 340 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 ACAP3Q96P50 834 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 IPO9Q96P70 1041 aaKnown RBP20.73■□□□□ 0.91
CDX1-202ENST00000616154 CNTN3Q9P232 1028 aa20.73■□□□□ 0.91
CDX1-202ENST00000616154 EP300Q09472 2414 aaPredicted RBP20.72■□□□□ 0.91
CDX1-202ENST00000616154 DCNP07585 359 aaKnown RBP20.72■□□□□ 0.91
CDX1-202ENST00000616154 ROR1Q01973 937 aa20.72■□□□□ 0.91
CDX1-202ENST00000616154 RESTQ13127 1097 aa20.72■□□□□ 0.91
CDX1-202ENST00000616154 SPECC1Q5M775 1068 aa20.72■□□□□ 0.91
CDX1-202ENST00000616154 VARS2Q5ST30 1063 aaKnown RBP20.72■□□□□ 0.91
CDX1-202ENST00000616154 SYT2Q8N9I0 419 aaPredicted RBP20.72■□□□□ 0.91
CDX1-202ENST00000616154 PJA1Q8NG27 643 aa20.72■□□□□ 0.91
CDX1-202ENST00000616154 ZNF461Q8TAF7 563 aa20.72■□□□□ 0.91
CDX1-202ENST00000616154 NTPCRQ9BSD7 190 aaKnown RBP20.72■□□□□ 0.91
CDX1-202ENST00000616154 TCHPQ9BT92 498 aa20.72■□□□□ 0.91
CDX1-202ENST00000616154 AVENQ9NQS1 362 aaPredicted RBP20.72■□□□□ 0.91
CDX1-202ENST00000616154 KCND2Q9NZV8 630 aa20.72■□□□□ 0.91
CDX1-202ENST00000616154 ARHGEF37A1IGU5 675 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 VPS37CA5D8V6 355 aaPredicted RBP20.71■□□□□ 0.91
CDX1-202ENST00000616154 SYN3O14994 580 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 SLC16A4O15374 487 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 ABLIM3O94929 683 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 RPL9P32969 192 aaKnown RBP20.71■□□□□ 0.91
CDX1-202ENST00000616154 LONP1P36776 959 aaKnown RBP20.71■□□□□ 0.91
CDX1-202ENST00000616154 SLC12A3P55017 1021 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 PTPAQ15257 358 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 SF3A1Q15459 793 aaKnown RBP20.71■□□□□ 0.91
CDX1-202ENST00000616154 ADSSL1Q8N142 457 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 SPIRE2Q8WWL2 714 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 KCNN1Q92952 543 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 FOXQ1Q9C009 403 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 SEMA4AQ9H3S1 761 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 KCNG1Q9UIX4 513 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 PATJQ8NI35 1801 aa20.71■□□□□ 0.91
CDX1-202ENST00000616154 COL4A3Q01955 1670 aa20.7■□□□□ 0.9
CDX1-202ENST00000616154 WDR27A2RRH5 827 aa20.7■□□□□ 0.9
CDX1-202ENST00000616154 MEFVO15553 781 aaPredicted RBP20.7■□□□□ 0.9
CDX1-202ENST00000616154 TBC1D4O60343 1298 aa20.7■□□□□ 0.9
CDX1-202ENST00000616154 PRKCQQ04759 706 aa20.7■□□□□ 0.9
CDX1-202ENST00000616154 MLF2Q15773 248 aaPredicted RBP20.7■□□□□ 0.9
CDX1-202ENST00000616154 KXD1Q9BQD3 176 aa20.7■□□□□ 0.9
CDX1-202ENST00000616154 DDX23Q9BUQ8 820 aaKnown RBP20.7■□□□□ 0.9
CDX1-202ENST00000616154 GDE1Q9NZC3 331 aa20.7■□□□□ 0.9
CDX1-202ENST00000616154 MTMR6Q9Y217 621 aa20.7■□□□□ 0.9
CDX1-202ENST00000616154 MRPS23Q9Y3D9 190 aaKnown RBP20.7■□□□□ 0.9
CDX1-202ENST00000616154 SFI1A8K8P3 1242 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 H7C4K7 107 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 TOM1L1O75674 476 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 RHOP08100 348 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 HARSP12081 509 aaKnown RBP20.69■□□□□ 0.9
CDX1-202ENST00000616154 PLS3P13797 630 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 GLULP15104 373 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 PFKPQ01813 784 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 STRN3Q13033 797 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 SNW1Q13573 536 aaKnown RBP20.69■□□□□ 0.9
CDX1-202ENST00000616154 MRPL58Q14197 206 aaKnown RBP20.69■□□□□ 0.9
CDX1-202ENST00000616154 NOLC1Q14978 699 aaKnown RBP eCLIP20.69■□□□□ 0.9
CDX1-202ENST00000616154 SLC5A9Q2M3M2 681 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 C1orf210Q8IVY1 113 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 TMEM161BQ8NDZ6 487 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 ING5Q8WYH8 240 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 C18orf25Q96B23 403 aaPredicted RBP20.69■□□□□ 0.9
CDX1-202ENST00000616154 ZBTB45Q96K62 511 aaPredicted RBP20.69■□□□□ 0.9
CDX1-202ENST00000616154 NUB1Q9Y5A7 615 aa20.69■□□□□ 0.9
CDX1-202ENST00000616154 KANSL1LA0AUZ9 987 aa20.68■□□□□ 0.9
CDX1-202ENST00000616154 ECI2O75521 394 aa20.68■□□□□ 0.9
CDX1-202ENST00000616154 LRG1P02750 347 aa20.68■□□□□ 0.9
CDX1-202ENST00000616154 MAPTP10636 758 aaKnown RBP20.68■□□□□ 0.9
CDX1-202ENST00000616154 ATF2P15336 505 aa20.68■□□□□ 0.9
CDX1-202ENST00000616154 PTPN2P17706 415 aa20.68■□□□□ 0.9
CDX1-202ENST00000616154 ELF1P32519 619 aa20.68■□□□□ 0.9
CDX1-202ENST00000616154 ZRSR1Q15695 479 aaKnown RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms