RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 IPPQ9Y573 584 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 SQORQ9Y6N5 450 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 A0A0U1RQJ8 604 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 EIF3CLB5ME19 914 aaKnown RBP15.36■□□□□ 0.05
USP39-220ENST00000613444 GPR182O15218 404 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 RECQL4O94761 1208 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 GFPT2O94808 682 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 LCA5LO95447 670 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 SGPL1O95470 568 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 CD52P31358 61 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 PTK2Q05397 1052 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 KLHL30Q0D2K2 578 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 ZBTB6Q15916 424 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 XKR4Q5GH76 650 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 U2AF1L4Q8WU68 220 aaKnown RBP15.36■□□□□ 0.05
USP39-220ENST00000613444 ATRIPQ8WXE1 791 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 ANKRD36BP1Q96IX9 119 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 CCDC42Q96M95 316 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 EIF3CQ99613 913 aaKnown RBP15.36■□□□□ 0.05
USP39-220ENST00000613444 ARID3AQ99856 593 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 SYT11Q9BT88 431 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 HAUS4Q9H6D7 363 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 NUB1Q9Y5A7 615 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 UMODL1Q5DID0 1318 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 PHACTR2O75167 634 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 TNNC2P02585 160 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 CCDC175P0C221 793 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 FERP16591 822 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 AKAP5P24588 427 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 KIF11P52732 1056 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 MFAP3P55082 362 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 MYL6P60660 151 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 NOP14P78316 857 aaKnown RBP15.36■□□□□ 0.05
USP39-220ENST00000613444 DSC3Q14574 896 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 TMEM132DQ14C87 1099 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 TWF2Q6IBS0 349 aaKnown RBP15.36■□□□□ 0.05
USP39-220ENST00000613444 ZNF571Q7Z3V5 609 aaPredicted RBP15.36■□□□□ 0.05
USP39-220ENST00000613444 NT5DC4Q86YG4 428 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 FAM71AQ8IYT1 594 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 C1orf112Q9NSG2 853 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 CNTN3Q9P232 1028 aa15.36■□□□□ 0.05
USP39-220ENST00000613444 MGEA5O60502 916 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 CYLC1P35663 651 aaPredicted RBP15.35■□□□□ 0.05
USP39-220ENST00000613444 PKN2Q16513 984 aaKnown RBP15.35■□□□□ 0.05
USP39-220ENST00000613444 TDRD12Q587J7 1177 aaKnown RBP15.35■□□□□ 0.05
USP39-220ENST00000613444 WDR44Q5JSH3 913 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 NYAP1Q6ZVC0 841 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 TRAIPQ9BWF2 469 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 DERAQ9Y315 318 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 BZW2Q9Y6E2 419 aaKnown RBP15.35■□□□□ 0.05
USP39-220ENST00000613444 TET1Q8NFU7 2136 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 HSPA1AP0DMV8 641 aaKnown RBP15.35■□□□□ 0.05
USP39-220ENST00000613444 HSPA1BP0DMV9 641 aaKnown RBP15.35■□□□□ 0.05
USP39-220ENST00000613444 PAK2Q13177 524 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 ENOSF1Q7L5Y1 443 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 USP38Q8NB14 1042 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 FAM105AQ9NUU6 356 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 PCDHB2Q9Y5E7 798 aa15.35■□□□□ 0.05
USP39-220ENST00000613444 ZSCAN12O43309 604 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 ACO1P21399 889 aaKnown RBP15.34■□□□□ 0.05
USP39-220ENST00000613444 CTCFP49711 727 aaPredicted RBP15.34■□□□□ 0.05
USP39-220ENST00000613444 GUCY2FP51841 1108 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 YARSP54577 528 aaKnown RBP15.34■□□□□ 0.05
USP39-220ENST00000613444 CUL2Q13617 745 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 SGSM1Q2NKQ1 1148 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 CAGE1Q8TC20 777 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 KIF12Q96FN5 646 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 FAM81BQ96LP2 452 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 APOL6Q9BWW8 343 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 TANC1Q9C0D5 1861 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 SCN5AQ14524 2016 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 MEIS3P2A8K0S8 358 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 ITGB3P05106 788 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 COL6A1P12109 1028 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 CLCN1P35523 988 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 CYP27A1Q02318 531 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 GFPT1Q06210 699 aaPredicted RBP15.34■□□□□ 0.05
USP39-220ENST00000613444 GPNMBQ14956 572 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 FMNL3Q8IVF7 1028 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 UBR7Q8N806 425 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 JAKMIP2Q96AA8 810 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 NENFQ9UMX5 172 aa15.34■□□□□ 0.05
USP39-220ENST00000613444 A0A087X0T9 212 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 CCP110O43303 1012 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 AKR1B10O60218 316 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 ABL1P00519 1130 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 TFRCP02786 760 aaKnown RBP15.33■□□□□ 0.04
USP39-220ENST00000613444 FAM228BP0C875 321 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 KCNE1P15382 129 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 ARHGAP25P42331 645 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 TRPC3Q13507 836 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 SLC18A3Q16572 532 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 SLC39A5Q6ZMH5 540 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 ANKRD33Q7Z3H0 272 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 MRPL10Q7Z7H8 261 aaKnown RBP15.33■□□□□ 0.04
USP39-220ENST00000613444 VRTNQ9H8Y1 702 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 RNF19AQ9NV58 838 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 DPP3Q9NY33 737 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 KLK14Q9P0G3 267 aa15.33■□□□□ 0.04
USP39-220ENST00000613444 ADAMTS1Q9UHI8 967 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms