RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 SLC8B1Q6J4K2 584 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 PARM1Q6UWI2 310 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 ZPBP2Q6X784 338 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 USP34Q70CQ2 3546 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 CCDC105Q8IYK2 499 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 DTWD2Q8NBA8 298 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 ITFG1Q8TB96 612 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 GPR152Q8TDT2 470 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 FGF14Q92915 247 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 CDK5RAP3Q96JB5 506 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 AK8Q96MA6 479 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 HAPLN2Q9GZV7 340 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 SLC2A4RGQ9NR83 387 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 HCFC1R1Q9NWW0 138 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 LARSQ9P2J5 1176 aaKnown RBP8.33□□□□□ -1.08
CUX1-219ENST00000606749 KCNH3Q9ULD8 1083 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 CA14Q9ULX7 337 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.33□□□□□ -1.08
CUX1-219ENST00000606749 PIEZO1Q92508 2521 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 TTC26A0AVF1 554 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 ARHGEF37A1IGU5 675 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 WDR27A2RRH5 827 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 H0YCG3 227 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 H7C4K7 107 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 SYN3O14994 580 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 RHOP08100 348 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 CLTAP09496 248 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 HARSP12081 509 aaKnown RBP8.32□□□□□ -1.08
CUX1-219ENST00000606749 ATF2P15336 505 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 ELF1P32519 619 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 UBA7P41226 1012 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 NCKAP1LP55160 1127 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 GPC5P78333 572 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 ROR1Q01973 937 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 NOLC1Q14978 699 aaKnown RBP eCLIP8.32□□□□□ -1.08
CUX1-219ENST00000606749 ZBTB6Q15916 424 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 PABPC1LQ4VXU2 614 aaKnown RBP8.32□□□□□ -1.08
CUX1-219ENST00000606749 PHLDB3Q6NSJ2 640 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 MTSS1LQ765P7 747 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 HAUS6Q7Z4H7 955 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 LRRC15Q8TF66 581 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 KCNN1Q92952 543 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 CALML4Q96GE6 196 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 SUSD3Q96L08 255 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 TBC1D32Q96NH3 1257 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 TBC1D17Q9HA65 648 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 PLEKHA5Q9HAU0 1116 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 UPF2Q9HAU5 1272 aaKnown RBP8.32□□□□□ -1.08
CUX1-219ENST00000606749 ANKFY1Q9P2R3 1169 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 FBXL5Q9UKA1 691 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 ODF2LQ9ULJ1 636 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 SIT1Q9Y3P8 196 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 NUB1Q9Y5A7 615 aa8.32□□□□□ -1.08
CUX1-219ENST00000606749 NOTCH4Q99466 2003 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 LACTBL1A8MY62 500 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 PRRG1O14668 218 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 SEC24AO95486 1093 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 CXCL8P10145 99 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 PTPN2P17706 415 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 LONP1P36776 959 aaKnown RBP8.31□□□□□ -1.08
CUX1-219ENST00000606749 TNFSF9P41273 254 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 MATR3P43243 847 aaKnown RBP eCLIP8.31□□□□□ -1.08
CUX1-219ENST00000606749 ZNF131P52739 623 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 ARPP19P56211 112 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 STARD6P59095 220 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 GRIN1Q05586 938 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 SPAG1Q07617 926 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 DHX8Q14562 1220 aaKnown RBP8.31□□□□□ -1.08
CUX1-219ENST00000606749 MCM6Q14566 821 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 ANGPT1Q15389 498 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 SF3A1Q15459 793 aaKnown RBP8.31□□□□□ -1.08
CUX1-219ENST00000606749 SLC5A9Q2M3M2 681 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 CTXN3Q4LDR2 81 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 TPGS2Q68CL5 300 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 POTEHQ6S545 545 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 ASCL5Q7RTU5 278 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 BRAPQ7Z569 592 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 FRMD5Q7Z6J6 570 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 GPBP1Q86WP2 473 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 NPAS3Q8IXF0 933 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 TCEAL8Q8IYN2 117 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 TMEM130Q8N3G9 435 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 MYCT1Q8N699 235 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 APPL2Q8NEU8 664 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 DDX12PQ92771 950 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 MCRS1Q96EZ8 462 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 BICD1Q96G01 975 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 REEP2Q9BRK0 252 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 AVENQ9NQS1 362 aaPredicted RBP8.31□□□□□ -1.08
CUX1-219ENST00000606749 ARHGEF3Q9NR81 526 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 BLOC1S4Q9NUP1 217 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 DLGAP2Q9P1A6 1054 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 TUBGCP4Q9UGJ1 667 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 TBX20Q9UMR3 447 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 MRPS23Q9Y3D9 190 aaKnown RBP8.31□□□□□ -1.08
CUX1-219ENST00000606749 VPS13AQ96RL7 3174 aa8.31□□□□□ -1.08
CUX1-219ENST00000606749 A0A0B4J269 797 aa8.3□□□□□ -1.08
CUX1-219ENST00000606749 M0QZQ0 153 aa8.3□□□□□ -1.08
CUX1-219ENST00000606749 TRAK2O60296 914 aa8.3□□□□□ -1.08
CUX1-219ENST00000606749 FAM189A1O60320 539 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms