RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SYCP3Q8IZU3 236 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 RIN2Q8WYP3 895 aaPredicted RBP12.13□□□□□ -0.47
VRK3-210ENST00000596121 PPP2R3CQ969Q6 453 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 FAM212AQ96EL1 285 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 KIF12Q96FN5 646 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 UROC1Q96N76 676 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 CDCA3Q99618 268 aaPredicted RBP12.13□□□□□ -0.47
VRK3-210ENST00000596121 FAM213AQ9BRX8 229 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 S1PR5Q9H228 398 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 TMEM206Q9H813 350 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 MRPL17Q9NRX2 175 aaKnown RBP12.13□□□□□ -0.47
VRK3-210ENST00000596121 SLC38A7Q9NVC3 462 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 CDH22Q9UJ99 828 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 HCFC2Q9Y5Z7 792 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 C5orf42Q9H799 3197 aa12.13□□□□□ -0.47
VRK3-210ENST00000596121 PDCD11Q14690 1871 aaKnown RBP12.12□□□□□ -0.47
VRK3-210ENST00000596121 VWA8A3KMH1 1905 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 CLIC2O15247 247 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 EIF3DO15371 548 aaKnown RBP eCLIP12.12□□□□□ -0.47
VRK3-210ENST00000596121 RPN1P04843 607 aaKnown RBP12.12□□□□□ -0.47
VRK3-210ENST00000596121 URODP06132 367 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 GARTP22102 1010 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 FGFR3P22607 806 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 TKTP29401 623 aaKnown RBP12.12□□□□□ -0.47
VRK3-210ENST00000596121 LRPAP1P30533 357 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 NDUFV1P49821 464 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 CLCN4P51793 760 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 PPP2R3AQ06190 1150 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 PNOCQ13519 176 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 POSTNQ15063 836 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 BMT2Q1RMZ1 405 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 SPATA1Q5VX52 437 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 PTCRAQ6ISU1 281 aaPredicted RBP12.12□□□□□ -0.47
VRK3-210ENST00000596121 ANKRD54Q6NXT1 300 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 EFCAB13Q8IY85 973 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 C12orf76Q8N812 135 aaPredicted RBP12.12□□□□□ -0.47
VRK3-210ENST00000596121 LNX1Q8TBB1 728 aaPredicted RBP12.12□□□□□ -0.47
VRK3-210ENST00000596121 ERCC4Q92889 916 aaPredicted RBP12.12□□□□□ -0.47
VRK3-210ENST00000596121 DDX27Q96GQ7 796 aaKnown RBP12.12□□□□□ -0.47
VRK3-210ENST00000596121 APOL5Q9BWW9 433 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 AGPAT3Q9NRZ7 376 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 CD207Q9UJ71 328 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 MUC3AQ02505 3323 aa12.12□□□□□ -0.47
VRK3-210ENST00000596121 SF3B1O75533 1304 aaKnown RBP eCLIP12.11□□□□□ -0.473e-6■■■■■ 137.9
VRK3-210ENST00000596121 NCOR1O75376 2440 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 ANK1P16157 1881 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 SPTLC1O15269 473 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 MBTPS2O43462 519 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 EXTL3O43909 919 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 SPATA31D3P0C874 917 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 CYP3A5P20815 502 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 KLRC2P26717 231 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 RPL9P32969 192 aaKnown RBP12.11□□□□□ -0.47
VRK3-210ENST00000596121 FAM160A1Q05DH4 1040 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 SPATA31D4Q6ZUB0 917 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 CEP57Q86XR8 500 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 CBWD2Q8IUF1 395 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 BRSK2Q8IWQ3 736 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 ADAMTS19Q8TE59 1207 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 CLSTN3Q9BQT9 956 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 TTPALQ9BTX7 342 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 GZF1Q9H116 711 aaPredicted RBP12.11□□□□□ -0.47
VRK3-210ENST00000596121 ASB7Q9H672 318 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 CD320Q9NPF0 282 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 TSHZ2Q9NRE2 1034 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 HSPBP1Q9NZL4 362 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 STK39Q9UEW8 545 aa12.11□□□□□ -0.47
VRK3-210ENST00000596121 UBQLN1Q9UMX0 589 aaKnown RBP12.11□□□□□ -0.47
VRK3-210ENST00000596121 GOLGA6L4A6NEF3 574 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 RHOBTB3O94955 611 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 MYL1P05976 194 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 WEE2P0C1S8 567 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 POU5F1Q01860 360 aaKnown RBP12.1□□□□□ -0.47
VRK3-210ENST00000596121 TMEM132DQ14C87 1099 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 KNOP1Q1ED39 458 aaKnown RBP12.1□□□□□ -0.47
VRK3-210ENST00000596121 AAK1Q2M2I8 961 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 C9orf57Q5W0N0 161 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 KIAA1841Q6NSI8 718 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 ARMCX5Q6P1M9 558 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 LILRA6Q6PI73 481 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.1□□□□□ -0.47
VRK3-210ENST00000596121 STXBP4Q6ZWJ1 553 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 PALB2Q86YC2 1186 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 GLYCTKQ8IVS8 523 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 CD302Q8IX05 232 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 GPR65Q8IYL9 337 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 GPD1LQ8N335 351 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 TMEM87AQ8NBN3 555 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 SMRP1Q8NCR6 262 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 CXorf38Q8TB03 319 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 PIK3R5Q8WYR1 880 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 FBXL18Q96ME1 805 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 EMILIN2Q9BXX0 1053 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 KCTD10Q9H3F6 313 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 PDE11AQ9HCR9 933 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 EXOC1Q9NV70 894 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 FNIP2Q9P278 1114 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 DERAQ9Y315 318 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 UBE4BO95155 1302 aa12.1□□□□□ -0.47
VRK3-210ENST00000596121 PTPRJQ12913 1337 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms