RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 CCDC112Q8NEF3 446 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 FBXO22Q8NEZ5 403 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 OR8K1Q8NGG5 319 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 IQCDQ96DY2 449 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 FAM84AQ96KN4 292 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 BAG1Q99933 345 aaPredicted RBP11.31□□□□□ -0.6
VPS4B-204ENST00000589604 FTHL17Q9BXU8 183 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 CDT1Q9H211 546 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 CXCL16Q9H2A7 254 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 CPSF3Q9UKF6 684 aaKnown RBP11.31□□□□□ -0.6
VPS4B-204ENST00000589604 COQ4Q9Y3A0 265 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 HES2Q9Y543 173 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 PTPRJQ12913 1337 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 RALGAPA2Q2PPJ7 1873 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 P4HA2O15460 535 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 ZNF500O60304 480 aaPredicted RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 ARHGEF15O94989 841 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 UPP2O95045 317 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 MYOGP15173 224 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 RABGGTBP53611 331 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 NOLC1Q14978 699 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 TWF2Q6IBS0 349 aaKnown RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 FAM117BQ6P1L5 589 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 TRIM65Q6PJ69 517 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 ZNF598Q86UK7 904 aaKnown RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 ECHDC2Q86YB7 292 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 BRSK2Q8IWQ3 736 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 TMEM192Q8IY95 271 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 CEP120Q8N960 986 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 EHBP1Q8NDI1 1231 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 NEK11Q8NG66 645 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 LPPQ93052 612 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 CCDC127Q96BQ5 260 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 PCMTD1Q96MG8 357 aaPredicted RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 CHP1Q99653 195 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 NAA15Q9BXJ9 866 aaKnown RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 PDE11AQ9HCR9 933 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 RRAGDQ9NQL2 400 aaPredicted RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 CHST12Q9NRB3 414 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 GCNT4Q9P109 453 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 CEP72Q9P209 647 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 NPTXRO95502 500 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 C4BPAP04003 597 aaKnown RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 TPM1P09493 284 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 GTF2H1P32780 548 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 PBX2P40425 430 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 KCNJ6P48051 423 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 AFF1P51825 1210 aaKnown RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 POLR2FP61218 127 aaKnown RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 MYL7Q01449 175 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 MTF1Q14872 753 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 SCARA3Q6AZY7 606 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 PDXDC1Q6P996 788 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 GJB7Q6PEY0 223 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 RAD9BQ6WBX8 426 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 SLC24A5Q71RS6 500 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 SPRED2Q7Z698 418 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 SEMA4DQ92854 862 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 TOP1MTQ969P6 601 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 INTS2Q9H0H0 1204 aaKnown RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 NXF3Q9H4D5 531 aaKnown RBP11.3□□□□□ -0.6
VPS4B-204ENST00000589604 TMEM8AQ9HCN3 771 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 KCND1Q9NSA2 647 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 FAM105AQ9NUU6 356 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 FBXL5Q9UKA1 691 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 PLAGL2Q9UPG8 496 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 PCDHB2Q9Y5E7 798 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 FHOD1Q9Y613 1164 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 SLC4A7Q9Y6M7 1214 aa11.3□□□□□ -0.6
VPS4B-204ENST00000589604 TRANK1O15050 2925 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 A0A0U1RQF3 1178 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 LCHNA4D1U4 455 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 SOX1O00570 391 aaPredicted RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 MCF2P10911 925 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 FGFR1P11362 822 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 HARSP12081 509 aaKnown RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 UCHL3P15374 230 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 ATP2A2P16615 1042 aaKnown RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 ZSCAN20P17040 1043 aaPredicted RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 AXLP30530 894 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 MATR3P43243 847 aaKnown RBP eCLIP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 JAM2P57087 298 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 PCBP1Q15365 356 aaKnown RBP eCLIP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 ENOX2Q16206 610 aaKnown RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 ZNF568Q3ZCX4 644 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 CLLU1OSQ5K130 101 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 NOTUMQ6P988 496 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 SLC27A1Q6PCB7 646 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 AGMOQ6ZNB7 445 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 SV2AQ7L0J3 742 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 MRPL10Q7Z7H8 261 aaKnown RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 HERC6Q8IVU3 1022 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 TCHPQ9BT92 498 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 RC3H2Q9HBD1 1191 aaKnown RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 NLRC4Q9NPP4 1024 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 SPTLC3Q9NUV7 552 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 RBAKQ9NYW8 714 aaPredicted RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 HCSTQ9UBK5 93 aa11.29□□□□□ -0.6
VPS4B-204ENST00000589604 YBX2Q9Y2T7 364 aaKnown RBP11.29□□□□□ -0.6
VPS4B-204ENST00000589604 IPPQ9Y573 584 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms