RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 KLHDC7AQ5VTJ3 777 aa17.41■□□□□ 0.38
SS18-226ENST00000585241 C7orf61Q8IZ16 206 aa17.41■□□□□ 0.38
SS18-226ENST00000585241 BEST2Q8NFU1 509 aa17.41■□□□□ 0.38
SS18-226ENST00000585241 NEK11Q8NG66 645 aa17.41■□□□□ 0.38
SS18-226ENST00000585241 ZFP42Q96MM3 310 aa17.41■□□□□ 0.38
SS18-226ENST00000585241 VRTNQ9H8Y1 702 aa17.41■□□□□ 0.38
SS18-226ENST00000585241 CEP72Q9P209 647 aa17.41■□□□□ 0.38
SS18-226ENST00000585241 MKI67P46013 3256 aaKnown RBP17.4■□□□□ 0.38
SS18-226ENST00000585241 LRRN2O75325 713 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 OFD1O75665 1012 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 BAIAP3O94812 1187 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 STAU1O95793 577 aaKnown RBP17.4■□□□□ 0.38
SS18-226ENST00000585241 ASS1P00966 412 aaKnown RBP17.4■□□□□ 0.38
SS18-226ENST00000585241 ACTN1P12814 892 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 TRIM21P19474 475 aaKnown RBP17.4■□□□□ 0.38
SS18-226ENST00000585241 LRPAP1P30533 357 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 PIK3CAP42336 1068 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 ARID5BQ14865 1188 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 GLRA4Q5JXX5 417 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 CLLU1OSQ5K130 101 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 SMYD5Q6GMV2 418 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 NPAS4Q8IUM7 802 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 DRC7Q8IY82 874 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 SPC24Q8NBT2 197 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 TAF4BQ92750 862 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 FAXDC2Q96IV6 333 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 PCMTD1Q96MG8 357 aaPredicted RBP17.4■□□□□ 0.38
SS18-226ENST00000585241 RPS6KC1Q96S38 1066 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 NAA15Q9BXJ9 866 aaKnown RBP17.4■□□□□ 0.38
SS18-226ENST00000585241 XYLT2Q9H1B5 865 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 FAM207AQ9NSI2 230 aaPredicted RBP17.4■□□□□ 0.38
SS18-226ENST00000585241 SLC38A7Q9NVC3 462 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 MIOSQ9NXC5 875 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 DPP3Q9NY33 737 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 APEX2Q9UBZ4 518 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 TUBGCP4Q9UGJ1 667 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 CAPN11Q9UMQ6 739 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 PLAGL2Q9UPG8 496 aa17.4■□□□□ 0.38
SS18-226ENST00000585241 ANO9A1A5B4 782 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 HOXA2O43364 376 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 PHACTR2O75167 634 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 CST3P01034 146 aaPredicted RBP17.39■□□□□ 0.37
SS18-226ENST00000585241 UCHL3P15374 230 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 ATICP31939 592 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 GSDMDP57764 484 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 GRIK3Q13003 919 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 GLB1LQ6UWU2 654 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 NT5C1BQ96P26 610 aa17.39■□□□□ 0.37
SS18-226ENST00000585241 CCDC85CA6NKD9 419 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 GOLGA6L6A8MZA4 724 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 EVI5O60447 810 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 MFAP3LO75121 409 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 ITGB3P05106 788 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 THP07101 528 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 FXR1P51114 621 aaKnown RBP eCLIP17.38■□□□□ 0.37
SS18-226ENST00000585241 SCNN1GP51170 649 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 AFF1P51825 1210 aaKnown RBP17.38■□□□□ 0.37
SS18-226ENST00000585241 RBP5P82980 135 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 APBA1Q02410 837 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 GCNT1Q02742 428 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 FPGSQ05932 587 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 SOX4Q06945 474 aaPredicted RBP17.38■□□□□ 0.37
SS18-226ENST00000585241 TRPC3Q13507 836 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 SGSM1Q2NKQ1 1148 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 SCARA3Q6AZY7 606 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 PHLDB3Q6NSJ2 640 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 C16orf59Q7L2K0 433 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 PPFIBP1Q86W92 1011 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 LRRC52Q8N7C0 313 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 RNF169Q8NCN4 708 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 HELQQ8TDG4 1101 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 BAP1Q92560 729 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 BADQ92934 168 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 C18orf25Q96B23 403 aaPredicted RBP17.38■□□□□ 0.37
SS18-226ENST00000585241 FAM81BQ96LP2 452 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 MYO6Q9UM54 1294 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 PCDHB7Q9Y5E2 793 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 FHOD1Q9Y613 1164 aa17.38■□□□□ 0.37
SS18-226ENST00000585241 RNF225M0QZC1 329 aaPredicted RBP17.37■□□□□ 0.37
SS18-226ENST00000585241 PIRO00625 290 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 TPM1P09493 284 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 POLR2BP30876 1174 aaKnown RBP17.37■□□□□ 0.37
SS18-226ENST00000585241 CASP14P31944 242 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 GUCY2FP51841 1108 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 MYL6P60660 151 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 NOP14P78316 857 aaKnown RBP17.37■□□□□ 0.37
SS18-226ENST00000585241 ZBED6P86452 979 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 NOMO2Q5JPE7 1267 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 WDR44Q5JSH3 913 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 C9orf57Q5W0N0 161 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 IQCEQ6IPM2 695 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.37■□□□□ 0.37
SS18-226ENST00000585241 CNGA4Q8IV77 575 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 ARHGEF19Q8IW93 802 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 TNS4Q8IZW8 715 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 TC2NQ8N9U0 490 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 PI4K2AQ9BTU6 479 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 IMPG2Q9BZV3 1241 aa17.37■□□□□ 0.37
SS18-226ENST00000585241 APOBEC3GQ9HC16 384 aaKnown RBP17.37■□□□□ 0.37
SS18-226ENST00000585241 KANSL3Q9P2N6 904 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms