RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 TISP43B9A030 160 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 B9A039 149 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 OPHN1O60890 802 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 SKAP2O75563 359 aaPredicted RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 TYRP14679 529 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 ADSLP30566 484 aaPredicted RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 ARL4CP56559 192 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 DLX2Q07687 328 aaPredicted RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 GRM1Q13255 1194 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 SNAPC2Q13487 334 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 PRKG1Q13976 671 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 CNGB1Q14028 1251 aaPredicted RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 TAF12Q16514 161 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 ETV3LQ6ZN32 361 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 TBC1D1Q86TI0 1168 aaPredicted RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 CDYL2Q8N8U2 506 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 GPR156Q8NFN8 814 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 ERP27Q96DN0 273 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 DDX11Q96FC9 970 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 ZSCAN31Q96LW9 406 aaPredicted RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 RMDN3Q96TC7 470 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 SEC62Q99442 399 aaKnown RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 HEPHQ9BQS7 1158 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 SPATA25Q9BR10 227 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 FDXACB1Q9BRP7 624 aaPredicted RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 COLEC11Q9BWP8 271 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 SLC26A6Q9BXS9 759 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 OSBPL5Q9H0X9 879 aaPredicted RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 ADAM7Q9H2U9 754 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 SACM1LQ9NTJ5 587 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 RBM12Q9NTZ6 932 aaKnown RBP5.72□□□□□ -1.49
SS18-223ENST00000583595 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.72□□□□□ -1.49
SS18-223ENST00000583595 STK32BQ9NY57 414 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 DACT1Q9NYF0 836 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 ARHGAP28Q9P2N2 729 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 POLG2Q9UHN1 485 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 MAGEL2Q9UJ55 1249 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 GJD2Q9UKL4 321 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 ITGB1BP2Q9UKP3 347 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 SLC45A1Q9Y2W3 748 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 RABGAP1Q9Y3P9 1069 aa5.72□□□□□ -1.49
SS18-223ENST00000583595 A0A0A6YYJ9 748 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 A0A1W2PPC4 97 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 SH3D21A4FU49 640 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 ISM1B1AKI9 464 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 TCERG1O14776 1098 aaKnown RBP5.71□□□□□ -1.5
SS18-223ENST00000583595 NPC1O15118 1278 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 ARHGAP6O43182 974 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 RPLP2P05387 115 aaKnown RBP5.71□□□□□ -1.5
SS18-223ENST00000583595 C8BP07358 591 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 CYP2C8P10632 490 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 CKMT1AP12532 417 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 BUD31P41223 144 aaPredicted RBP5.71□□□□□ -1.5
SS18-223ENST00000583595 TUBP50607 506 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 HTRA4P83105 476 aaPredicted RBP5.71□□□□□ -1.5
SS18-223ENST00000583595 MGAT2Q10469 447 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 KHDC1LQ5JSQ8 128 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 C16orf54Q6UWD8 224 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 FAM26EQ8N5C1 309 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.71□□□□□ -1.5
SS18-223ENST00000583595 CXorf38Q8TB03 319 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 ASB12Q8WXK4 309 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 MUL1Q969V5 352 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 ZBTB8AQ96BR9 441 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 LTV1Q96GA3 475 aaPredicted RBP5.71□□□□□ -1.5
SS18-223ENST00000583595 FAM167BQ9BTA0 163 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 ALG13Q9NP73 1137 aaKnown RBP5.71□□□□□ -1.5
SS18-223ENST00000583595 TDP1Q9NUW8 608 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 SPATA6Q9NWH7 488 aaPredicted RBP5.71□□□□□ -1.5
SS18-223ENST00000583595 COL20A1Q9P218 1284 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 RBPJLQ9UBG7 517 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 SLC39A10Q9ULF5 831 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 MAN2B2Q9Y2E5 1009 aa5.71□□□□□ -1.5
SS18-223ENST00000583595 A0A0A6YYK5 440 aaPredicted RBP5.7□□□□□ -1.5
SS18-223ENST00000583595 GOLGA6L3A6NEY3 463 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 FIBPO43427 364 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 AKR1B10O60218 316 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 CAPN3P20807 821 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 FGFR2P21802 821 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 XPAP23025 273 aaPredicted RBP5.7□□□□□ -1.5
SS18-223ENST00000583595 PTGS1P23219 599 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 RRM1P23921 792 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 SLC6A9P48067 706 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 MGAT5Q09328 741 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 TARDBPQ13148 414 aaKnown RBP eCLIP5.7□□□□□ -1.5
SS18-223ENST00000583595 SMAD4Q13485 552 aaKnown RBP5.7□□□□□ -1.5
SS18-223ENST00000583595 CCDC184Q52MB2 194 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 FKBP15Q5T1M5 1219 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 VPS53Q5VIR6 699 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 MZT2BQ6NZ67 158 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 CD300LDQ6UXZ3 194 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 FRMD5Q7Z6J6 570 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 MIB1Q86YT6 1006 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 CARFQ8N187 725 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 MSL3Q8N5Y2 521 aaKnown RBP5.7□□□□□ -1.5
SS18-223ENST00000583595 GIMAP8Q8ND71 665 aaPredicted RBP5.7□□□□□ -1.5
SS18-223ENST00000583595 CCHCR1Q8TD31 782 aa5.7□□□□□ -1.5
SS18-223ENST00000583595 USP13Q92995 863 aaPredicted RBP5.7□□□□□ -1.5
SS18-223ENST00000583595 MTFMTQ96DP5 389 aaKnown RBP5.7□□□□□ -1.5
SS18-223ENST00000583595 MRGPRX4Q96LA9 322 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms