RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SLC10A6Q3KNW5 377 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 SPECC1Q5M775 1068 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 FAM173BQ6P4H8 233 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 HAUS6Q7Z4H7 955 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 BACH2Q9BYV9 841 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 LARSQ9P2J5 1176 aaKnown RBP22.37■■□□□ 1.17
SHMT1-209ENST00000582653 CDH7Q9ULB5 785 aa22.37■■□□□ 1.17
SHMT1-209ENST00000582653 VWA8A3KMH1 1905 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 STK25O00506 426 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 PODXLO00592 558 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 CCL16O15467 120 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 SLC26A4O43511 780 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 GFRA3O60609 400 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 NBL1P41271 181 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 MATR3P43243 847 aaKnown RBP eCLIP22.36■■□□□ 1.17
SHMT1-209ENST00000582653 NCKAP1LP55160 1127 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 NTHL1P78549 312 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 NOLC1Q14978 699 aaKnown RBP eCLIP22.36■■□□□ 1.17
SHMT1-209ENST00000582653 ZPBP2Q6X784 338 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 USP49Q70CQ1 688 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 TMEM130Q8N3G9 435 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 RASSF8Q8NHQ8 419 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 ZNF461Q8TAF7 563 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 SLC7A14Q8TBB6 771 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 SLC2A4RGQ9NR83 387 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 FOXD4L1Q9NU39 408 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 CNTN3Q9P232 1028 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 ODF2LQ9ULJ1 636 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 POLIQ9UNA4 740 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 NUMBLQ9Y6R0 609 aa22.36■■□□□ 1.17
SHMT1-209ENST00000582653 CLDN3O15551 220 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 PDCP20941 246 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 SYT1P21579 422 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 MARCKSP29966 332 aaPredicted RBP22.35■■□□□ 1.17
SHMT1-209ENST00000582653 MCL1Q07820 350 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 PTPAQ15257 358 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 CCDC105Q8IYK2 499 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 MYCT1Q8N699 235 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 DTWD2Q8NBA8 298 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 ST13P5Q8NFI4 369 aaPredicted RBP22.35■■□□□ 1.17
SHMT1-209ENST00000582653 GPR152Q8TDT2 470 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 RAD54LQ92698 747 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 FGF13Q92913 245 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 BICD1Q96G01 975 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 EPSTI1Q96J88 318 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 RPP25Q9BUL9 199 aaKnown RBP22.35■■□□□ 1.17
SHMT1-209ENST00000582653 ZHX3Q9H4I2 956 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 DOCK8Q8NF50 2099 aa22.35■■□□□ 1.17
SHMT1-209ENST00000582653 MYH11P35749 1972 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 SYN3O14994 580 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 TBC1D4O60343 1298 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 ABLIM3O94929 683 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 FAM13AO94988 1023 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 CEBPZQ03701 1054 aaKnown RBP22.34■■□□□ 1.17
SHMT1-209ENST00000582653 SPAG1Q07617 926 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 RESTQ13127 1097 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 MRPL58Q14197 206 aaKnown RBP22.34■■□□□ 1.17
SHMT1-209ENST00000582653 SLC8B1Q6J4K2 584 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 PHLDB3Q6NSJ2 640 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 PARM1Q6UWI2 310 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 FGF14Q92915 247 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 DNMT3BQ9UBC3 853 aaKnown RBP22.34■■□□□ 1.17
SHMT1-209ENST00000582653 KCNH3Q9ULD8 1083 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 CA14Q9ULX7 337 aa22.34■■□□□ 1.17
SHMT1-209ENST00000582653 KRT18P05783 430 aaKnown RBP22.33■■□□□ 1.17
SHMT1-209ENST00000582653 CXCL8P10145 99 aa22.33■■□□□ 1.17
SHMT1-209ENST00000582653 TNFSF9P41273 254 aa22.33■■□□□ 1.17
SHMT1-209ENST00000582653 VARS2Q5ST30 1063 aaKnown RBP22.33■■□□□ 1.17
SHMT1-209ENST00000582653 MTSS1LQ765P7 747 aa22.33■■□□□ 1.17
SHMT1-209ENST00000582653 ITFG1Q8TB96 612 aa22.33■■□□□ 1.17
SHMT1-209ENST00000582653 KCNN1Q92952 543 aa22.33■■□□□ 1.17
SHMT1-209ENST00000582653 CCSER1Q9C0I3 900 aa22.33■■□□□ 1.17
SHMT1-209ENST00000582653 TUBGCP4Q9UGJ1 667 aa22.33■■□□□ 1.17
SHMT1-209ENST00000582653 TBX20Q9UMR3 447 aa22.33■■□□□ 1.17
SHMT1-209ENST00000582653 CACNA1HO95180 2353 aa22.33■■□□□ 1.16
SHMT1-209ENST00000582653 H0YCG3 227 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 H7C4K7 107 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 K7ENM7 598 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 TRAK2O60296 914 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 DDIT3P35638 169 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 ZNF131P52739 623 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 PABPC1LQ4VXU2 614 aaKnown RBP22.32■■□□□ 1.16
SHMT1-209ENST00000582653 LARP4BQ92615 738 aaKnown RBP22.32■■□□□ 1.16
SHMT1-209ENST00000582653 CLIC6Q96NY7 704 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 PARVGQ9HBI0 331 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 HCFC1R1Q9NWW0 138 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 FBXO2Q9UK22 296 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-209ENST00000582653 NUB1Q9Y5A7 615 aa22.32■■□□□ 1.16
SHMT1-209ENST00000582653 ARHGEF37A1IGU5 675 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 ATF2P15336 505 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 NMT1P30419 496 aaKnown RBP22.31■■□□□ 1.16
SHMT1-209ENST00000582653 ELF1P32519 619 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 LIG4P49917 911 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 GPC5P78333 572 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 ROR1Q01973 937 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 ANGPT1Q15389 498 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 ZBTB41Q5SVQ8 909 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 TBC1D17Q9HA65 648 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 PLEKHA5Q9HAU0 1116 aa22.31■■□□□ 1.16
SHMT1-209ENST00000582653 AVENQ9NQS1 362 aaPredicted RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms