RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 RRM1P23921 792 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 RFC5P40937 340 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 CUL2Q13617 745 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 PRKG1Q13976 671 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 TARBP2Q15633 366 aaKnown RBP10.77□□□□□ -0.69
VPS53-220ENST00000576149 PTGISQ16647 500 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 KRT71Q3SY84 523 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 TREML2Q5T2D2 321 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 IFNLR1Q8IU57 520 aaPredicted RBP10.77□□□□□ -0.69
VPS53-220ENST00000576149 CCDC105Q8IYK2 499 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 PCYT2Q99447 389 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 MSTO1Q9BUK6 570 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 APOBEC3GQ9HC16 384 aaKnown RBP10.77□□□□□ -0.69
VPS53-220ENST00000576149 FBXO40Q9UH90 709 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 NOVA2Q9UNW9 492 aaKnown RBP10.77□□□□□ -0.69
VPS53-220ENST00000576149 ADGRA2Q96PE1 1338 aa10.77□□□□□ -0.69
VPS53-220ENST00000576149 CLDN3O15551 220 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 FARP2O94887 1054 aaPredicted RBP10.76□□□□□ -0.69
VPS53-220ENST00000576149 EDN1P05305 212 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 EDNRBP24530 442 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 SLC1A1P43005 524 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 IFFO1Q0D2I5 559 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 ZBTB41Q5SVQ8 909 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 MON1BQ7L1V2 547 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 RIOX2Q8IUF8 465 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 C10orf67Q8IYJ2 551 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 SLCO2A1Q92959 643 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 CYFIP2Q96F07 1278 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 CGRRF1Q99675 332 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 TRIM7Q9C029 511 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 LRRC4CQ9HCJ2 640 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 NRBP2Q9NSY0 501 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 BTBD7Q9P203 1132 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 MTRF1LQ9UGC7 380 aaKnown RBP10.76□□□□□ -0.69
VPS53-220ENST00000576149 SNCAIPQ9Y6H5 919 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 CNTNAP2Q9UHC6 1331 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 MYH9P35579 1960 aaKnown RBP10.76□□□□□ -0.69
VPS53-220ENST00000576149 PEX10O60683 326 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 NSFP46459 744 aaKnown RBP10.76□□□□□ -0.69
VPS53-220ENST00000576149 KCNJ1P48048 391 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 PPP2R2AP63151 447 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 ART4Q93070 314 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 RNF25Q96BH1 459 aaPredicted RBP10.76□□□□□ -0.69
VPS53-220ENST00000576149 FAM129AQ9BZQ8 928 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 FAM107BQ9H098 131 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 ANKFY1Q9P2R3 1169 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 CNTN6Q9UQ52 1028 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 PASKQ96RG2 1323 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 SIP14410 1827 aa10.76□□□□□ -0.69
VPS53-220ENST00000576149 WDR90Q96KV7 1748 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 SOWAHBA6NEL2 793 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 DCDC2CA8MYV0 355 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 ADCY3O60266 1144 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 SHBGP04278 402 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 TBXAS1P24557 533 aaPredicted RBP10.75□□□□□ -0.69
VPS53-220ENST00000576149 MAGOHP61326 146 aaKnown RBP10.75□□□□□ -0.69
VPS53-220ENST00000576149 CAPSQ13938 189 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 VGLL4Q14135 290 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 ODF2Q5BJF6 829 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 TRIM72Q6ZMU5 477 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 RINLQ6ZS11 566 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 HOOK3Q86VS8 718 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 ABRAQ8N0Z2 381 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 TLCD1Q96CP7 247 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 SGIP1Q9BQI5 828 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 RASSF4Q9H2L5 321 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 PTPN22Q9Y2R2 807 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 PCDHB4Q9Y5E5 795 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 FAM169AQ9Y6X4 670 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 ANKRD65E5RJM6 399 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 MAFO75444 373 aaPredicted RBP10.75□□□□□ -0.69
VPS53-220ENST00000576149 PROSCO94903 275 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 ECEL1O95672 775 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 CFHP08603 1231 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 CLTAP09496 248 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 GNA15P30679 374 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 PSEN1P49768 467 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 STAT5BP51692 787 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 NOMO3P69849 1222 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 NOP14P78316 857 aaKnown RBP10.75□□□□□ -0.69
VPS53-220ENST00000576149 PTP4A2Q12974 167 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 NEDD9Q14511 834 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 SGO2Q562F6 1265 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 FAM160B1Q5W0V3 765 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 DENND2CQ68D51 928 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 LLGL2Q6P1M3 1020 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 TMEM270Q6UE05 265 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 ZPBP2Q6X784 338 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 B4GALNT4Q76KP1 1039 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 APBB1IPQ7Z5R6 666 aaPredicted RBP10.75□□□□□ -0.69
VPS53-220ENST00000576149 PHLDB2Q86SQ0 1253 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 NLRP14Q86W24 1093 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 GPC2Q8N158 579 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 OR5B17Q8NGF7 314 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 MYCBPAPQ8TBZ2 947 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 MAIP1Q8WWC4 291 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 C1orf54Q8WWF1 131 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 DDX27Q96GQ7 796 aaKnown RBP10.75□□□□□ -0.69
VPS53-220ENST00000576149 VCPIP1Q96JH7 1222 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 CCT8L2Q96SF2 557 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms