RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 C18orf25Q96B23 403 aaPredicted RBP17.58■□□□□ 0.41
CLN3-229ENST00000567963 UPF2Q9HAU5 1272 aaKnown RBP17.58■□□□□ 0.41
CLN3-229ENST00000567963 SLC2A4RGQ9NR83 387 aa17.58■□□□□ 0.41
CLN3-229ENST00000567963 DNMT3BQ9UBC3 853 aaKnown RBP17.58■□□□□ 0.41
CLN3-229ENST00000567963 NOTCH4Q99466 2003 aa17.58■□□□□ 0.4
CLN3-229ENST00000567963 NPHP3-ACAD11A0A0J9YXS1 232 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 CLDN3O15551 220 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 NOLC1Q14978 699 aaKnown RBP eCLIP17.57■□□□□ 0.4
CLN3-229ENST00000567963 SEZ6Q53EL9 994 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 VARS2Q5ST30 1063 aaKnown RBP17.57■□□□□ 0.4
CLN3-229ENST00000567963 LARP1BQ659C4 914 aaKnown RBP17.57■□□□□ 0.4
CLN3-229ENST00000567963 ZPBP2Q6X784 338 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 ITFG1Q8TB96 612 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 AK8Q96MA6 479 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 HCFC1R1Q9NWW0 138 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 LARSQ9P2J5 1176 aaKnown RBP17.57■□□□□ 0.4
CLN3-229ENST00000567963 ANKFY1Q9P2R3 1169 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 SMC3Q9UQE7 1217 aa17.57■□□□□ 0.4
CLN3-229ENST00000567963 ZFHX2Q9C0A1 2572 aaPredicted RBP17.57■□□□□ 0.4
CLN3-229ENST00000567963 SYN3O14994 580 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 TBC1D4O60343 1298 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 ABLIM3O94929 683 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 ROR1Q01973 937 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 CACNB1Q02641 598 aaPredicted RBP17.56■□□□□ 0.4
CLN3-229ENST00000567963 MCL1Q07820 350 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 MRPL58Q14197 206 aaKnown RBP17.56■□□□□ 0.4
CLN3-229ENST00000567963 PABPC1LQ4VXU2 614 aaKnown RBP17.56■□□□□ 0.4
CLN3-229ENST00000567963 DTWD2Q8NBA8 298 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 KCNH3Q9ULD8 1083 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.56■□□□□ 0.4
CLN3-229ENST00000567963 NUB1Q9Y5A7 615 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 PDCD11Q14690 1871 aaKnown RBP17.56■□□□□ 0.4
CLN3-229ENST00000567963 WDR27A2RRH5 827 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 SLC26A4O43511 780 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 ATF2P15336 505 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 NCKAP1LP55160 1127 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 GPC5P78333 572 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 ANGPT1Q15389 498 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 PHLDB3Q6NSJ2 640 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 MTSS1LQ765P7 747 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 KCNN1Q92952 543 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 SUSD3Q96L08 255 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 HAPLN2Q9GZV7 340 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 TBC1D17Q9HA65 648 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 ARHGEF3Q9NR81 526 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 ODF2LQ9ULJ1 636 aa17.56■□□□□ 0.4
CLN3-229ENST00000567963 MYH15Q9Y2K3 1946 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 ARHGEF37A1IGU5 675 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 H0YCG3 227 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 H7C4K7 107 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 RFX1P22670 979 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 ELF1P32519 619 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 UBA7P41226 1012 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 ASCL5Q7RTU5 278 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 HAUS6Q7Z4H7 955 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 CALML4Q96GE6 196 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 PLEKHA5Q9HAU0 1116 aa17.55■□□□□ 0.4
CLN3-229ENST00000567963 RHOP08100 348 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 CXCL8P10145 99 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 MATR3P43243 847 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLN3-229ENST00000567963 NPAS3Q8IXF0 933 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 TCEAL8Q8IYN2 117 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 LRRC15Q8TF66 581 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 BICD1Q96G01 975 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 TBC1D32Q96NH3 1257 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 REEP2Q9BRK0 252 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 AVENQ9NQS1 362 aaPredicted RBP17.54■□□□□ 0.4
CLN3-229ENST00000567963 TUBGCP4Q9UGJ1 667 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 FBXL5Q9UKA1 691 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 MRPS23Q9Y3D9 190 aaKnown RBP17.54■□□□□ 0.4
CLN3-229ENST00000567963 SIT1Q9Y3P8 196 aa17.54■□□□□ 0.4
CLN3-229ENST00000567963 TTC26A0AVF1 554 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 PRRG1O14668 218 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 BMP15O95972 392 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 LRG1P02750 347 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 CLTAP09496 248 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 PTPN2P17706 415 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 MCM4P33991 863 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 ARPP19P56211 112 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 STARD6P59095 220 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 DHX8Q14562 1220 aaKnown RBP17.53■□□□□ 0.4
CLN3-229ENST00000567963 TPGS2Q68CL5 300 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 BRAPQ7Z569 592 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 FRMD5Q7Z6J6 570 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 GPBP1Q86WP2 473 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 DDX12PQ92771 950 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 BLOC1S4Q9NUP1 217 aa17.53■□□□□ 0.4
CLN3-229ENST00000567963 PRR23AA6NEV1 266 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 SEC24AO95486 1093 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 DCNP07585 359 aaKnown RBP17.52■□□□□ 0.4
CLN3-229ENST00000567963 SCP2P22307 547 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 LONP1P36776 959 aaKnown RBP17.52■□□□□ 0.4
CLN3-229ENST00000567963 TNFSF9P41273 254 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 ZNF131P52739 623 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 GRIN1Q05586 938 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 SPAG1Q07617 926 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 ZBTB6Q15916 424 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 SLC5A9Q2M3M2 681 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 CTXN3Q4LDR2 81 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 TMEM130Q8N3G9 435 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms