RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 TMC5Q6UXY8 1006 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 STXBP4Q6ZWJ1 553 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 FBXL6Q8N531 539 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 ZNF461Q8TAF7 563 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 KCNG4Q8TDN1 519 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 ATOH1Q92858 354 aaPredicted RBP12.2□□□□□ -0.46
CDH3-206ENST00000567674 EPSTI1Q96J88 318 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 SUSD3Q96L08 255 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 FIZ1Q96SL8 496 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 PAAF1Q9BRP4 392 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 STRA6Q9BX79 667 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 TNMDQ9H2S6 317 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 KCNH3Q9ULD8 1083 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 C2CD2Q9Y426 696 aa12.2□□□□□ -0.46
CDH3-206ENST00000567674 PODXLO00592 558 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 FAM189A1O60320 539 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 TBC1D4O60343 1298 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 PPP1R37O75864 691 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 ABLIM3O94929 683 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 SNRPFP62306 86 aaKnown RBP12.19□□□□□ -0.46
CDH3-206ENST00000567674 PPP2R3AQ06190 1150 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 LIN9Q5TKA1 542 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 DDX12PQ92771 950 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 BICD1Q96G01 975 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 ZMAT2Q96NC0 199 aaKnown RBP12.19□□□□□ -0.46
CDH3-206ENST00000567674 TMEM206Q9H813 350 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 RPF1Q9H9Y2 349 aaKnown RBP12.19□□□□□ -0.46
CDH3-206ENST00000567674 FAM86C1Q9NVL1 165 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 HSFX1Q9UBD0 423 aa12.19□□□□□ -0.46
CDH3-206ENST00000567674 CLUHO75153 1309 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 ZDBF2Q9HCK1 2354 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 MTCL1Q9Y4B5 1905 aaKnown RBP12.18□□□□□ -0.46
CDH3-206ENST00000567674 C2CD4DB7Z1M9 353 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 K7ENM7 598 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 M0QZQ0 153 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 SPTLC2O15270 562 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 CUTAO60888 179 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 OAZ2O95190 189 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 HSP90AA1P07900 732 aaKnown RBP12.18□□□□□ -0.46
CDH3-206ENST00000567674 ATF2P15336 505 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 GARTP22102 1010 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 MARCKSP29966 332 aaPredicted RBP12.18□□□□□ -0.46
CDH3-206ENST00000567674 ID4P47928 161 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 AARSP49588 968 aaKnown RBP eCLIP12.18□□□□□ -0.46
CDH3-206ENST00000567674 GRIN1Q05586 938 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 RAD51AP2Q09MP3 1159 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 SMARCB1Q12824 385 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 CD300LGQ6UXG3 332 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 ZBTB33Q86T24 672 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 CEP57Q86XR8 500 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 CEP120Q8N960 986 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 IQUBQ8NA54 791 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 LEMD2Q8NC56 503 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 SMG7Q92540 1137 aaKnown RBP12.18□□□□□ -0.46
CDH3-206ENST00000567674 ZNF707Q96C28 371 aaPredicted RBP12.18□□□□□ -0.46
CDH3-206ENST00000567674 DNAJC19Q96DA6 116 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 ASIC4Q96FT7 647 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 USP28Q96RU2 1077 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 PLIN2Q99541 437 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 POLD4Q9HCU8 107 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 ANKFY1Q9P2R3 1169 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 CPSF3Q9UKF6 684 aaKnown RBP12.18□□□□□ -0.46
CDH3-206ENST00000567674 PCDHB8Q9UN66 801 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 NUB1Q9Y5A7 615 aa12.18□□□□□ -0.46
CDH3-206ENST00000567674 F8W810 466 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 IL18RAPO95256 599 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 ZSCAN22P10073 491 aaPredicted RBP12.17□□□□□ -0.46
CDH3-206ENST00000567674 TYMPP19971 482 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 STAT6P42226 847 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 MATR3P43243 847 aaKnown RBP eCLIP12.17□□□□□ -0.46
CDH3-206ENST00000567674 TDGQ13569 410 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 STK38Q15208 465 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 PPM1LQ5SGD2 360 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 L1TD1Q5T7N2 865 aaKnown RBP12.17□□□□□ -0.46
CDH3-206ENST00000567674 SPATA1Q5VX52 437 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 PALB2Q86YC2 1186 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 CCDC65Q8IXS2 484 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 TCEAL8Q8IYN2 117 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 C12orf76Q8N812 135 aaPredicted RBP12.17□□□□□ -0.46
CDH3-206ENST00000567674 BEST2Q8NFU1 509 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 LRRC15Q8TF66 581 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 ZBTB45Q96K62 511 aaPredicted RBP12.17□□□□□ -0.46
CDH3-206ENST00000567674 ACCSQ96QU6 501 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 MSTO1Q9BUK6 570 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 PIDD1Q9HB75 910 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 KBTBD4Q9NVX7 518 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 CGNQ9P2M7 1197 aaKnown RBP12.17□□□□□ -0.46
CDH3-206ENST00000567674 DSEQ9UL01 958 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 MYH11P35749 1972 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 DCHS1Q96JQ0 3298 aa12.17□□□□□ -0.46
CDH3-206ENST00000567674 MYO15AQ9UKN7 3530 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 NPHP3-ACAD11A0A0J9YXS1 232 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 OR6C75A6NL08 312 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 MYL1P05976 194 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 C8AP07357 584 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 ELF1P32519 619 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 OR1D2P34982 312 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 CLCN5P51795 746 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 OSTNP61366 133 aa12.16□□□□□ -0.46
CDH3-206ENST00000567674 SOX4Q06945 474 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms