RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 UBA7P41226 1012 aa18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 VARS2Q5ST30 1063 aaKnown RBP18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 HAUS6Q7Z4H7 955 aa18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 LRRC15Q8TF66 581 aa18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 ATOH1Q92858 354 aaPredicted RBP18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 CALML4Q96GE6 196 aa18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 AVENQ9NQS1 362 aaPredicted RBP18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 BLOC1S4Q9NUP1 217 aa18.81■□□□□ 0.6
VPS9D1-203ENST00000563798 NPHP3-ACAD11A0A0J9YXS1 232 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 ARHGEF37A1IGU5 675 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 KRBA1A5PL33 1030 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 CCL16O15467 120 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 PI15O43692 258 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 PIGRP01833 764 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 CLTAP09496 248 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 NTHL1P78549 312 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 ZBTB6Q15916 424 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 KYAT1Q16773 422 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 FLCNQ8NFG4 579 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 FGF13Q92913 245 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 C18orf25Q96B23 403 aaPredicted RBP18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 SUSD3Q96L08 255 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 TSPAN18Q96SJ8 248 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 REEP2Q9BRK0 252 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 HAPLN2Q9GZV7 340 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 ANKFY1Q9P2R3 1169 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 DNMT3BQ9UBC3 853 aaKnown RBP18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 NUMBLQ9Y6R0 609 aa18.8■□□□□ 0.6
VPS9D1-203ENST00000563798 CITO14578 2027 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 TTC26A0AVF1 554 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 H7C4K7 107 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 ADRB2P07550 413 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 CFHP08603 1231 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 ATF2P15336 505 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 LRPAP1P30533 357 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 NBL1P41271 181 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 ROR1Q01973 937 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 PHLDB3Q6NSJ2 640 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 CCDC105Q8IYK2 499 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 TCEAL8Q8IYN2 117 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 MAFFQ9ULX9 164 aa18.79■□□□□ 0.6
VPS9D1-203ENST00000563798 FAM189A1O60320 539 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 HARSP12081 509 aaKnown RBP18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 CYP3A5P20815 502 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 ABCD1P33897 745 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 CACNB1Q02641 598 aaPredicted RBP18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 GRIN1Q05586 938 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 SF3A1Q15459 793 aaKnown RBP18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 TPGS2Q68CL5 300 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 MTSS1LQ765P7 747 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 GPBP1Q86WP2 473 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 ITFG1Q8TB96 612 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 GPR152Q8TDT2 470 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 RAD54LQ92698 747 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 FGF14Q92915 247 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 CCSER1Q9C0I3 900 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 PARVGQ9HBI0 331 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 FAM86C1Q9NVL1 165 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 TBX20Q9UMR3 447 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 NUB1Q9Y5A7 615 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 MYH11P35749 1972 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 DOCK6Q96HP0 2047 aa18.78■□□□□ 0.6
VPS9D1-203ENST00000563798 PDCD11Q14690 1871 aaKnown RBP18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 WDR27A2RRH5 827 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 CXCL8P10145 99 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 PLCG1P19174 1290 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 PDCP20941 246 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 AARSP49588 968 aaKnown RBP eCLIP18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 PABPC1LQ4VXU2 614 aaKnown RBP18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 SEZ6Q53EL9 994 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 PARM1Q6UWI2 310 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 NPAS3Q8IXF0 933 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 APPL2Q8NEU8 664 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 FIZ1Q96SL8 496 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 RPP25Q9BUL9 199 aaKnown RBP18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 ST6GALNAC4Q9H4F1 302 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 HCFC1R1Q9NWW0 138 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 FBXL5Q9UKA1 691 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 UBQLN1Q9UMX0 589 aaKnown RBP18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 PCDHB8Q9UN66 801 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 POLIQ9UNA4 740 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 NOTCH4Q99466 2003 aa18.77■□□□□ 0.6
VPS9D1-203ENST00000563798 M0QZQ0 153 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 OGTO15294 1046 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 TRAK2O60296 914 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 GTF2BQ00403 316 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 MCM6Q14566 821 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 KARSQ15046 597 aaKnown RBP18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 PTPAQ15257 358 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 MYCT1Q8N699 235 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 DTWD2Q8NBA8 298 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 DDX12PQ92771 950 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 OXCT2Q9BYC2 517 aaPredicted RBP18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 ARHGEF3Q9NR81 526 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 GDE1Q9NZC3 331 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 TUBGCP4Q9UGJ1 667 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 USP34Q70CQ2 3546 aa18.76■□□□□ 0.59
VPS9D1-203ENST00000563798 A0A0B4J269 797 aa18.75■□□□□ 0.59
VPS9D1-203ENST00000563798 HNRNPDLO14979 420 aaKnown RBP18.75■□□□□ 0.59
VPS9D1-203ENST00000563798 MICAL2O94851 1124 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms