RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 PMS1P54277 932 aaKnown RBP13.88□□□□□ -0.19
CSPG4P11-201ENST00000560634 DEFA1P59665 94 aa13.88□□□□□ -0.19
CSPG4P11-201ENST00000560634 DEFA3P59666 94 aa13.88□□□□□ -0.19
CSPG4P11-201ENST00000560634 ANKMY2Q8IV38 441 aa13.88□□□□□ -0.19
CSPG4P11-201ENST00000560634 TEX2Q8IWB9 1127 aa13.88□□□□□ -0.19
CSPG4P11-201ENST00000560634 SLC44A5Q8NCS7 719 aa13.88□□□□□ -0.19
CSPG4P11-201ENST00000560634 USP6NLQ92738 828 aa13.88□□□□□ -0.19
CSPG4P11-201ENST00000560634 ARHGEF5Q12774 1597 aa13.88□□□□□ -0.19
CSPG4P11-201ENST00000560634 TBC1D4O60343 1298 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 EFL1Q7Z2Z2 1120 aaKnown RBP13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 DCUN1D1Q96GG9 259 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CHP1Q99653 195 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 ZBED2Q9BTP6 218 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 PLEKHA5Q9HAU0 1116 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 RAB6BQ9NRW1 208 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 PAK5Q9P286 719 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 TJP2Q9UDY2 1190 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 PJA2O43164 708 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 NMT2O60551 498 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 SNRPAP09012 282 aaKnown RBP13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 UCHL3P15374 230 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 PDGFRAP16234 1089 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 PLD3Q8IV08 490 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CALML6Q8TD86 181 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 DNAJC9Q8WXX5 260 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 SEC16BQ96JE7 1060 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 POLD4Q9HCU8 107 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 NLRP1Q9C000 1473 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 TTC37Q6PGP7 1564 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 FOXN1O15353 648 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 AKAP10O43572 662 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 BLVRAP53004 296 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 VCPP55072 806 aaKnown RBP13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CCZ1BP86790 482 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CCZ1P86791 482 aaPredicted RBP13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 HLFQ16534 295 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 WDR72Q3MJ13 1102 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 RFX8Q6ZV50 586 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 DTX3LQ8TDB6 740 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 FOPNLQ96NB1 174 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 ZNF556Q9HAH1 456 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 ALG13Q9NP73 1137 aaKnown RBP13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CCDC78A2IDD5 438 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 GOLGA8TH3BQL2 631 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 PSMD14O00487 310 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 ENO3P13929 434 aaPredicted RBP13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 LSP1P33241 339 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CACNB3P54284 484 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 RBP5P82980 135 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 EXOSC10Q01780 885 aaKnown RBP13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 WASHC5Q12768 1159 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 XKR3Q5GH77 459 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CLEC4FQ8N1N0 589 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 MED15Q96RN5 788 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 GID8Q9NWU2 228 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 GRID1Q9ULK0 1009 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CDY2AQ9Y6F7 541 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 CDY1Q9Y6F8 540 aa13.87□□□□□ -0.19
CSPG4P11-201ENST00000560634 C5orf58C9J3I9 102 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 MMP10P09238 476 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 ADRA2BP18089 450 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 FMO5P49326 533 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 CYLC2Q14093 348 aaPredicted RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 NR1I3Q14994 352 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 AGR3Q8TD06 166 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 DPF2Q92785 391 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 ERP27Q96DN0 273 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 WRNIP1Q96S55 665 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 NPHS2Q9NP85 383 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 TLR2O60603 784 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SERPINI2O75830 405 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SEC24DO94855 1032 aaPredicted RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 USP10Q14694 798 aaKnown RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 TRIP10Q15642 601 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SH2D3CQ8N5H7 860 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 CYFIP2Q96F07 1278 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SPATA17Q96L03 361 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 C9orf72Q96LT7 481 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 VPS33BQ9H267 617 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 AFF4Q9UHB7 1163 aaKnown RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 TUBE1Q9UJT0 475 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 ASB14A6NK59 587 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 KIF28PB7ZC32 967 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 GOLGA8RI6L899 631 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 TRAPPC3O43617 180 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 KCNA3P22001 575 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 NLRP11P59045 1033 aaKnown RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SGSM1Q2NKQ1 1148 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 MPP6Q9NZW5 540 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SYNDIG1LA6NDD5 238 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SRP72O76094 671 aaKnown RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 TMEM253P0C7T8 217 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SNRPFP62306 86 aaKnown RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 SPP2Q13103 211 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 TRIM28Q13263 835 aaKnown RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 PDAP1Q13442 181 aaKnown RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 BBS7Q8IWZ6 715 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 MKNK1Q9BUB5 465 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 HSPBP1Q9NZL4 362 aa13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms