RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 PRSS36Q5K4E3 855 aa19.63■□□□□ 0.73
TSPAN3-208ENST00000560514 APBB1IPQ7Z5R6 666 aaPredicted RBP19.63■□□□□ 0.73
TSPAN3-208ENST00000560514 CSGALNACT1Q8TDX6 532 aa19.63■□□□□ 0.73
TSPAN3-208ENST00000560514 SMARCD2Q92925 531 aa19.63■□□□□ 0.73
TSPAN3-208ENST00000560514 DDX27Q96GQ7 796 aaKnown RBP19.63■□□□□ 0.73
TSPAN3-208ENST00000560514 ASB16Q96NS5 453 aa19.63■□□□□ 0.73
TSPAN3-208ENST00000560514 GPRC5CQ9NQ84 441 aa19.63■□□□□ 0.73
TSPAN3-208ENST00000560514 CFAP47Q6ZTR5 3102 aa19.63■□□□□ 0.73
TSPAN3-208ENST00000560514 I3L4J1 428 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 GDF9O60383 454 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 PRKCBP05771 671 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 XRCC6P12956 609 aaKnown RBP eCLIP19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 ATP2B1P20020 1258 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 CCNE1P24864 410 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 TOB2Q14106 344 aaPredicted RBP19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 CALCRLQ16602 461 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 DCAF4L1Q3SXM0 396 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 AASDHQ4L235 1098 aaPredicted RBP19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 CDCA2Q69YH5 1023 aaPredicted RBP19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 C1orf228Q6PIY5 440 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 LONP2Q86WA8 852 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 MAP4K3Q8IVH8 894 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 YAF2Q8IY57 180 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 SPEM1Q8N4L4 309 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 TCEAL4Q96EI5 215 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 LARP6Q9BRS8 491 aaKnown RBP19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 CXCL16Q9H2A7 254 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 DAXXQ9UER7 740 aaPredicted RBP19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 CYP46A1Q9Y6A2 500 aa19.62■□□□□ 0.73
TSPAN3-208ENST00000560514 TRIP11Q15643 1979 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 WDR27A2RRH5 827 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 HRO43593 1189 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 CHRNB1P11230 501 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 ATF2P15336 505 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 UPP1Q16831 310 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 HEATR6Q6AI08 1181 aaKnown RBP19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 SLC8B1Q6J4K2 584 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 VITQ6UXI7 678 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 C12orf50Q8NA57 414 aaPredicted RBP19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 DEPTORQ8TB45 409 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 FAM200AQ8TCP9 573 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 MSANTD3Q96H12 275 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 ZNF512Q96ME7 567 aaPredicted RBP19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 TTC12Q9H892 705 aaPredicted RBP19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 BRMS1Q9HCU9 246 aa19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 CNOT1A5YKK6 2376 aaKnown RBP19.61■□□□□ 0.73
TSPAN3-208ENST00000560514 PDCD11Q14690 1871 aaKnown RBP19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 USP24Q9UPU5 2620 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 A0A087WWV3 80 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 TTLL13PA6NNM8 815 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 H7C4K7 107 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 ACKR2O00590 384 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 ABLIM3O94929 683 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 TXKP42681 527 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 BRCC3P46736 316 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 KPNA1P52294 538 aaPredicted RBP19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 SRSF5Q13243 272 aaKnown RBP19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 POTEHQ6S545 545 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 TCEAL8Q8IYN2 117 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 LEMD2Q8NC56 503 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 OXER1Q8TDS5 423 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 SLITRK6Q9H5Y7 841 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 INSL5Q9Y5Q6 135 aa19.6■□□□□ 0.73
TSPAN3-208ENST00000560514 REC8O95072 547 aa19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 MYL4P12829 197 aa19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 VIPR2P41587 438 aa19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 YARSP54577 528 aaKnown RBP19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 PTGDRQ13258 359 aa19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 SKAP1Q86WV1 359 aa19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 ZSCAN18Q8TBC5 510 aaPredicted RBP19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 E2F7Q96AV8 911 aa19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 PPP1R10Q96QC0 940 aaKnown RBP19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 GOLGA2P5Q9HBQ8 144 aa19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 ASAH2Q9NR71 780 aa19.59■□□□□ 0.73
TSPAN3-208ENST00000560514 IGFBP6P24592 240 aaPredicted RBP19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 KRT2P35908 639 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 CCR2P41597 374 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 MLLT6P55198 1093 aaPredicted RBP19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 PPP2R5AQ15172 486 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 TPGS2Q68CL5 300 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 MFSD6LQ8IWD5 586 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 FAM160A2Q8N612 972 aaPredicted RBP19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 ZSWIM3Q96MP5 696 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 GPR88Q9GZN0 384 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 C8orf33Q9H7E9 229 aaPredicted RBP19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 ZSWIM6Q9HCJ5 1215 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 TOPORSQ9NS56 1045 aaPredicted RBP19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 SLC38A7Q9NVC3 462 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 USP20Q9Y2K6 914 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 NUB1Q9Y5A7 615 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 COL4A2P08572 1712 aa19.58■□□□□ 0.72
TSPAN3-208ENST00000560514 GREB1Q4ZG55 1949 aa19.57■□□□□ 0.72
TSPAN3-208ENST00000560514 HEPACAM2A8MVW5 462 aa19.57■□□□□ 0.72
TSPAN3-208ENST00000560514 SYN3O14994 580 aa19.57■□□□□ 0.72
TSPAN3-208ENST00000560514 NAMPTP43490 491 aa19.57■□□□□ 0.72
TSPAN3-208ENST00000560514 LIMK1P53667 647 aa19.57■□□□□ 0.72
TSPAN3-208ENST00000560514 GAS6Q14393 721 aa19.57■□□□□ 0.72
TSPAN3-208ENST00000560514 CTXN3Q4LDR2 81 aa19.57■□□□□ 0.72
TSPAN3-208ENST00000560514 EARS2Q5JPH6 523 aaKnown RBP19.57■□□□□ 0.72
TSPAN3-208ENST00000560514 DGKKQ5KSL6 1271 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms