RNA–Protein interactions for RNA: ENST00000558958.1

CLPX-203, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 1,493 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-203ENST00000558958 SCARA3Q6AZY7 606 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLPX-203ENST00000558958 C16orf59Q7L2K0 433 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 SPC24Q8NBT2 197 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 BEST2Q8NFU1 509 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 DPF3Q92784 378 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 C18orf25Q96B23 403 aaPredicted RBP19.5■□□□□ 0.71
CLPX-203ENST00000558958 SIX2Q9NPC8 291 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 RNF216Q9NWF9 866 aaPredicted RBP19.5■□□□□ 0.71
CLPX-203ENST00000558958 TUBGCP4Q9UGJ1 667 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 ITGA11Q9UKX5 1188 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.5■□□□□ 0.711e-8■□□□□ 8.2
CLPX-203ENST00000558958 MICAL3Q7RTP6 2002 aa19.5■□□□□ 0.71
CLPX-203ENST00000558958 EPHB6O15197 1021 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 XPOTO43592 962 aaKnown RBP19.49■□□□□ 0.71
CLPX-203ENST00000558958 EFCAB14O75071 495 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 NOL4O94818 638 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 THP07101 528 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 FGFR1P11362 822 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 CYP3A5P20815 502 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 SCNN1GP51170 649 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 GUCY2FP51841 1108 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 APBA1Q02410 837 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 CCDC173Q0VFZ6 552 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 NAB2Q15742 525 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 FIGNQ5HY92 759 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 KLHDC7AQ5VTJ3 777 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 GLB1LQ6UWU2 654 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 NPAS4Q8IUM7 802 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 TMEM130Q8N3G9 435 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 NEK11Q8NG66 645 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 HELQQ8TDG4 1101 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 NUP58Q9BVL2 599 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 TTYH3Q9C0H2 523 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 IMPACTQ9P2X3 320 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 LRFN2Q9ULH4 789 aa19.49■□□□□ 0.71
CLPX-203ENST00000558958 ZMYND8Q9ULU4 1186 aaPredicted RBP19.49■□□□□ 0.71
CLPX-203ENST00000558958 PDCD11Q14690 1871 aaKnown RBP19.49■□□□□ 0.71
CLPX-203ENST00000558958 BAIAP3O94812 1187 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 ITGB3P05106 788 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 TRIM21P19474 475 aaKnown RBP19.48■□□□□ 0.71
CLPX-203ENST00000558958 SOX4Q06945 474 aaPredicted RBP19.48■□□□□ 0.71
CLPX-203ENST00000558958 TRPC3Q13507 836 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 IQCDQ96DY2 449 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 PPP1R9BQ96SB3 815 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 GANQ9H2C0 597 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 SLC38A7Q9NVC3 462 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.48■□□□□ 0.71
CLPX-203ENST00000558958 LTBP2Q14767 1821 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 ZC3H11AO75152 810 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLPX-203ENST00000558958 GYPCP04921 128 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 MYL6P60660 151 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 RBP5P82980 135 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 GRIK3Q13003 919 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 TRIM14Q14142 442 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 PI4K2AQ9BTU6 479 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 APEX2Q9UBZ4 518 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 FBXL5Q9UKA1 691 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 INPP5FQ9Y2H2 1132 aa19.48■□□□□ 0.71
CLPX-203ENST00000558958 ANO9A1A5B4 782 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 HOXA2O43364 376 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 ASS1P00966 412 aaKnown RBP19.47■□□□□ 0.71
CLPX-203ENST00000558958 POMCP01189 267 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 FGBP02675 491 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 KRT19P08727 400 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 UCHL3P15374 230 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 POLR2BP30876 1174 aaKnown RBP19.47■□□□□ 0.71
CLPX-203ENST00000558958 EPHB4P54760 987 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 WDR5P61964 334 aaKnown RBP19.47■□□□□ 0.71
CLPX-203ENST00000558958 SGSM1Q2NKQ1 1148 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 NOMO2Q5JPE7 1267 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 WDR44Q5JSH3 913 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 PHLDB3Q6NSJ2 640 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 ZNF365Q70YC5 407 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 PPFIBP1Q86W92 1011 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 XYLT2Q9H1B5 865 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 AGAP1Q9UPQ3 857 aa19.47■□□□□ 0.71
CLPX-203ENST00000558958 A0A1W2PQJ5 194 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 RNF225M0QZC1 329 aaPredicted RBP19.46■□□□□ 0.71
CLPX-203ENST00000558958 AMHP03971 560 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 LRPAP1P30533 357 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 LRMPQ12912 555 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 C9orf57Q5W0N0 161 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 OTOP2Q7RTS6 562 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 URGCPQ8TCY9 931 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 CPLX3Q8WVH0 158 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 TAF4BQ92750 862 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 TOP1MTQ969P6 601 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 NT5C1BQ96P26 610 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 CASD1Q96PB1 797 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 NAA15Q9BXJ9 866 aaKnown RBP19.46■□□□□ 0.71
CLPX-203ENST00000558958 EDEM3Q9BZQ6 932 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 IMPG2Q9BZV3 1241 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 GOLGA2P5Q9HBQ8 144 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.46■□□□□ 0.716e-9■■■■■ 134.6
CLPX-203ENST00000558958 CEP72Q9P209 647 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 KANSL3Q9P2N6 904 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 CAPN11Q9UMQ6 739 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 DAAM1Q9Y4D1 1078 aa19.46■□□□□ 0.71
CLPX-203ENST00000558958 PIRO00625 290 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms