RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 EMC7Q9NPA0 242 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 CYP26B1Q9NR63 512 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 GJB4Q9NTQ9 266 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 KLHL11Q9NVR0 708 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 CCPG1Q9ULG6 757 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 PCDHA7Q9UN72 937 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 ADAMTS5Q9UNA0 930 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 PCDHB12Q9Y5F1 795 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 NCOR1O75376 2440 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 SCN9AQ15858 1988 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 NAV1Q8NEY1 1877 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CYP3A7-CYP3A51PA0A087WV96 503 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 FAM237AA0A1B0GTK4 181 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 VWA5AO00534 786 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 NEMFO60524 1076 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CCNT1O60563 726 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 STAM2O75886 525 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 KCNH1O95259 989 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ECEL1O95672 775 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CST3P01034 146 aaPredicted RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 CYP3A4P08684 503 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 OR52Z1P0C646 297 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 BMP4P12644 408 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 BMP1P13497 986 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CYP3A7P24462 503 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 AKAP5P24588 427 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CIITAP33076 1130 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CASP2P42575 452 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 SYKP43405 635 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 TOB1P50616 345 aaPredicted RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 HMGCS2P54868 508 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ZNF445P59923 1031 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CCNA1P78396 465 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 GUCY1A3Q02108 690 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 GHRHRQ02643 423 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ADCY1Q08828 1119 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 PDIA5Q14554 519 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 PTPAQ15257 358 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ZNF174Q15697 407 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 NPY5RQ15761 445 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 SLC35G1Q2M3R5 365 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 LETM2Q2VYF4 491 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 PPM1JQ5JR12 505 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 JAKMIP3Q5VZ66 844 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CAVIN1Q6NZI2 390 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 CCDC174Q6PII3 467 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 SASS6Q6UVJ0 657 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 LBX2Q6XYB7 198 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 KRBA2Q6ZNG9 492 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 USP53Q70EK8 1073 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 SRGAP1Q7Z6B7 1085 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CMTR2Q8IYT2 770 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 FSIP1Q8NA03 581 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 IQUBQ8NA54 791 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 TMEM145Q8NBT3 493 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 C1orf162Q8NEQ5 155 aaPredicted RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.68□□□□□ -1.5
LDLR-209ENST00000558528 TBCKQ8TEA7 893 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ANP32BQ92688 251 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 GTPBP3Q969Y2 492 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 CCDC47Q96A33 483 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 FAXDC2Q96IV6 333 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 SCLT1Q96NL6 688 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 TEX13BQ9BXU2 312 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ANO3Q9BYT9 981 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 NUP62CLQ9H1M0 184 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 TNMDQ9H2S6 317 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CPVLQ9H3G5 476 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ATXN3LQ9H3M9 355 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 CUEDC2Q9H467 287 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ZHX3Q9H4I2 956 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 MAGEF1Q9HAY2 307 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 ZCCHC17Q9NP64 241 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 RAD18Q9NS91 495 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 B4GALT6Q9UBX8 382 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 SCAF8Q9UPN6 1271 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 AGTPBP1Q9UPW5 1226 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 SF3B6Q9Y3B4 125 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 PCDHB6Q9Y5E3 794 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 PSME4Q14997 1843 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 RPTORQ8N122 1335 aa5.68□□□□□ -1.5
LDLR-209ENST00000558528 DDX60LQ5H9U9 1706 aaKnown RBP5.68□□□□□ -1.5
LDLR-209ENST00000558528 LAMB1P07942 1786 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CDH23Q9H251 3354 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 MYO5AQ9Y4I1 1855 aaKnown RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 ZNF891A8MT65 544 aaPredicted RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 UBE2Q2LH0YL09 131 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ARVCFO00192 962 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 MEIS2O14770 477 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 GSTA4O15217 222 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ZNF202O95125 648 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 IL33O95760 270 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 MT-CO1P00395 513 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CCDC192P0DO97 292 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ALAS1P13196 640 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 TYRP1P17643 537 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 MARCKSP29966 332 aaPredicted RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 MCM7P33993 719 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 SREBF1P36956 1147 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 UBA7P41226 1012 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms