RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 AXDND1Q5T1B0 1012 aaPredicted RBP17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 DYMQ7RTS9 669 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 BMP8AQ7Z5Y6 402 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 TDRD5Q8NAT2 981 aaKnown RBP17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 KREMEN2Q8NCW0 462 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 C18orf25Q96B23 403 aaPredicted RBP17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 ZNF707Q96C28 371 aaPredicted RBP17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 SUSD3Q96L08 255 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 MSTO1Q9BUK6 570 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 ZHX3Q9H4I2 956 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 MAGEF1Q9HAY2 307 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 WDR6Q9NNW5 1121 aaKnown RBP17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 UBQLN1Q9UMX0 589 aaKnown RBP17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 DERAQ9Y315 318 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 CCDC195A0A1B0GUA6 201 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 XPOTO43592 962 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 TBC1D4O60343 1298 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 ZMYND10O75800 440 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 HNRNPA1P09651 372 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 RPL17P18621 184 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 COL9A1P20849 921 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 IGFBP6P24592 240 aaPredicted RBP17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 MATR3P43243 847 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 AARSP49588 968 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 ZXDAP98168 799 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 MRPL58Q14197 206 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 SLC8B1Q6J4K2 584 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 KANK3Q6NY19 840 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 SHC4Q6S5L8 630 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 OTOP3Q7RTS5 596 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 CEP57Q86XR8 500 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 PRKD2Q9BZL6 878 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 TFIP11Q9UBB9 837 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 CFAP45Q9UL16 551 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 EXOC7Q9UPT5 735 aa17.47■□□□□ 0.39
CCDC88C-209ENST00000554872 TECTAO75443 2155 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 SPDYE4A6NLX3 237 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 WEE2P0C1S8 567 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 TKTP29401 623 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 TNFSF9P41273 254 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 POSTNQ15063 836 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 UVSSAQ2YD98 709 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 SEZ6Q53EL9 994 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 ZC2HC1CQ53FD0 456 aaPredicted RBP17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 L1TD1Q5T7N2 865 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 PALB2Q86YC2 1186 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 IQUBQ8NA54 791 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 STAMQ92783 540 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 ACSF2Q96CM8 615 aaPredicted RBP17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 ASB7Q9H672 318 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 MRPL44Q9H9J2 332 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 RPF1Q9H9Y2 349 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 TUBGCP4Q9UGJ1 667 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 C2CD2Q9Y426 696 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 PCDHB13Q9Y5F0 798 aa17.46■□□□□ 0.39
CCDC88C-209ENST00000554872 CLUHO75153 1309 aa17.46■□□□□ 0.38
CCDC88C-209ENST00000554872 FAM86C2PA6NEL3 165 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 LACTBL1A8MY62 500 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 ANKRD63C9JTQ0 380 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 RFPL2O75678 378 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 BRCC3P46736 316 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 AMPD3Q01432 767 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 SIGLEC14Q08ET2 396 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 PKP1Q13835 747 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 ZBTB41Q5SVQ8 909 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 SPATA1Q5VX52 437 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 TRIM67Q6ZTA4 783 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 UBALD2Q8IYN6 164 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 KIF12Q96FN5 646 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 ACCSQ96QU6 501 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 PYM1Q9BRP8 204 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 OXCT2Q9BYC2 517 aaPredicted RBP17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 TRIM9Q9C026 710 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 RCOR1Q9UKL0 485 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 MAFFQ9ULX9 164 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 SORCS3Q9UPU3 1222 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 NUB1Q9Y5A7 615 aa17.45■□□□□ 0.38
CCDC88C-209ENST00000554872 H7C4K7 107 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 M0QZQ0 153 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 ADAM12O43184 909 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 ADSSP30520 456 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 VARS2Q5ST30 1063 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 LIN9Q5TKA1 542 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 RESP18Q5W5W9 173 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 RSPO2Q6UXX9 243 aaPredicted RBP17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 NT5DC4Q86YG4 428 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 CCDC65Q8IXS2 484 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 PDILTQ8N807 584 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 APPL2Q8NEU8 664 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 FEZF2Q8TBJ5 459 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 SMG7Q92540 1137 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 TSHZ2Q9NRE2 1034 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 PANK4Q9NVE7 773 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 AGO2Q9UKV8 859 aaKnown RBP17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 PCDHB8Q9UN66 801 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 CDY1Q9Y6F8 540 aa17.44■□□□□ 0.38
CCDC88C-209ENST00000554872 ABLIM3O94929 683 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 C8AP07357 584 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 GARTP22102 1010 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 OR1D2P34982 312 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms