RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 CD4P01730 458 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 GYPCP04921 128 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 KRT16P08779 473 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 PDGFRAP16234 1089 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 MUTP22033 750 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 TMED1Q13445 227 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 TMEM132DQ14C87 1099 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 GANCQ8TET4 914 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 HNRNPLLQ8WVV9 542 aaKnown RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 ANKRD7Q92527 254 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 ABTB1Q969K4 478 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 PGBD4Q96DM1 585 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 OTUD5Q96G74 571 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 FHOD1Q9Y613 1164 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 MYO3AQ8NEV4 1616 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 IGSF9BQ9UPX0 1349 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 FAM47DPA6NHR8 397 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 PGM1P36871 562 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 HADHAP40939 763 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 SULT1E1P49888 294 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 NBPF20Q3BBV1 942 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 MXRA8Q9BRK3 442 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 KATNAL1Q9BW62 490 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 RSAD1Q9HA92 442 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 AGAP1Q9UPQ3 857 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 NEU2Q9Y3R4 380 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 RFX5P48382 616 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 HMGCS2P54868 508 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 EMC2Q15006 297 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 JAMLQ86YT9 394 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 FAM151AQ8WW52 585 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 PRMT1Q99873 361 aaKnown RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 TSSK1BQ9BXA7 367 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 IRAK4Q9NWZ3 460 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 CHCHD3Q9NX63 227 aaKnown RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 POLR1AO95602 1720 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 NR3C2P08235 984 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 LCP1P13796 627 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 CHN1P15882 459 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 MTMR2Q13614 643 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 USP38Q8NB14 1042 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 RNF217Q8TC41 542 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 HPS3Q969F9 1004 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 PBXIP1Q96AQ6 731 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 CCT8L2Q96SF2 557 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 ZC3H7BQ9UGR2 993 aaKnown RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 USP32Q8NFA0 1604 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 MYBP10242 640 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 KLHDC7AQ5VTJ3 777 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 CDC42EP5Q6NZY7 148 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 PRUNE1Q86TP1 453 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 ENGASEQ8NFI3 743 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 SLC26A7Q8TE54 656 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 XPO6Q96QU8 1125 aaKnown RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 ZBED2Q9BTP6 218 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 IRX2Q9BZI1 471 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 KDM4CQ9H3R0 1056 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 TJP2Q9UDY2 1190 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 ANKRD65E5RJM6 399 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 EXTL3O43909 919 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 ZNF200P98182 395 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 CUL3Q13618 768 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 BAATQ14032 418 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 INPP5AQ14642 412 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 MS4A14Q96JA4 679 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 MOV10L1Q9BXT6 1211 aaKnown RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 NTSR2O95665 410 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 LBRQ14739 615 aaKnown RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 MOXD1Q6UVY6 613 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 ZNF280CQ8ND82 737 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 ANKS1AQ92625 1134 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 GJD4Q96KN9 370 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 TRIM51Q9BSJ1 452 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 FRMD8P1Q9BZ68 369 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 OSBPL8Q9BZF1 889 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 SIK2Q9H0K1 926 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 RBM12Q9NTZ6 932 aaKnown RBP12.13□□□□□ -0.47
SYNE2-208ENST00000553289 KIF17Q9P2E2 1029 aa12.13□□□□□ -0.47
SYNE2-208ENST00000553289 CAMSAP1Q5T5Y3 1602 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 UBA6A0AVT1 1052 aaPredicted RBP12.12□□□□□ -0.47
SYNE2-208ENST00000553289 DPYSL4O14531 572 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 MTSS1O43312 755 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 MOCS2O96007 188 aaPredicted RBP12.12□□□□□ -0.47
SYNE2-208ENST00000553289 STX3Q13277 289 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 KCNB2Q92953 911 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 CMTM5Q96DZ9 223 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 ERP44Q9BS26 406 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 SARS2Q9NP81 518 aaKnown RBP12.12□□□□□ -0.47
SYNE2-208ENST00000553289 GPR75-ASB3A0A0A6YYF3 556 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 IQCA1LA6NCM1 817 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 HNRNPCL2B2RXH8 293 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 PPP1R3GB7ZBB8 358 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 DFFAO00273 331 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 ATP9BO43861 1147 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 GAS2O43903 313 aaKnown RBP12.12□□□□□ -0.47
SYNE2-208ENST00000553289 CPB1P15086 417 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 PPP4CP60510 307 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 NKX1-1Q15270 411 aaPredicted RBP12.12□□□□□ -0.47
SYNE2-208ENST00000553289 GRAMD4Q6IC98 578 aa12.12□□□□□ -0.47
SYNE2-208ENST00000553289 PRR5LQ6MZQ0 368 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms