RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 DPP9Q86TI2 863 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 PRELID2Q8N945 189 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 SCFD2Q8WU76 684 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 PCYT2Q99447 389 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 MMP19Q99542 508 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 MINDY3Q9H8M7 445 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 GDF3Q9NR23 364 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 CWC15Q9P013 229 aaKnown RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 RRP15Q9Y3B9 282 aaKnown RBP5.97□□□□□ -1.45
LIMA1-215ENST00000552823 SIPA1L1O43166 1804 aa5.97□□□□□ -1.45
LIMA1-215ENST00000552823 A0A087WZ62 844 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 GTPBP10A4D1E9 387 aaKnown RBP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 LRRD1A4D1F6 860 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 F8VP50 259 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 CAND2O75155 1236 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 ADCYAP1R1P41586 468 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 RPL21P46778 160 aaKnown RBP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 IREB2P48200 963 aaKnown RBP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 NCKAP1LP55160 1127 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 RWDD2BP57060 319 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 IFI35P80217 286 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 CDR2Q01850 454 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 MAPK6Q16659 721 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 KYNUQ16719 465 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 TXNRD3NBQ6F5E7 133 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 USP37Q86T82 979 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 FAM71AQ8IYT1 594 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 REPS2Q8NFH8 660 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 EPS8L3Q8TE67 593 aaKnown RBP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 AFG1LQ8WV93 481 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 DYDC1Q8WWB3 177 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 NLRP7Q8WX94 980 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 HES6Q96HZ4 224 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 MCEEQ96PE7 176 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 ZSWIM1Q9BR11 485 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 FDXACB1Q9BRP7 624 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 KCND2Q9NZV8 630 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 KLK14Q9P0G3 267 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF148Q9UQR1 794 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 ZC3H4Q9UPT8 1303 aaKnown RBP5.96□□□□□ -1.45
LIMA1-215ENST00000552823 C10orf71Q711Q0 1435 aa5.96□□□□□ -1.45
LIMA1-215ENST00000552823 EXTL3O43909 919 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 PLA2G6O60733 806 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 BANF1O75531 89 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 FARP2O94887 1054 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 VNN1O95497 513 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 MYCP01106 439 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 LAMTOR4Q0VGL1 99 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 IFT88Q13099 833 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 CALCOCO2Q13137 446 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 KIF22Q14807 665 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 PLCB4Q15147 1175 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 ZKSCAN8Q15776 578 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 KIZQ2M2Z5 673 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 ACAD10Q6JQN1 1059 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 GPAT2Q6NUI2 795 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 RHOT2Q8IXI1 618 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 GDAP1Q8TB36 358 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 PSPC1Q8WXF1 523 aaKnown RBP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 SHC3Q92529 594 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 CDHR1Q96JP9 859 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 ISCUQ9H1K1 167 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 CTNNAL1Q9UBT7 734 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 NOCTQ9UK39 431 aaKnown RBP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 GTF3C4Q9UKN8 822 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 MTUS1Q9ULD2 1270 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 MAGED2Q9UNF1 606 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 SYNGAP1Q96PV0 1343 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 NRXN2Q9P2S2 1712 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 POC1B-GALNT4F8VUJ3 575 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 EBAG9O00559 213 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 HCRTO43612 131 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 DKC1O60832 514 aaKnown RBP eCLIP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 STBD1O95210 358 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 VIMP08670 466 aaKnown RBP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 INSRRP14616 1297 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 CREB1P16220 341 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 YY1P25490 414 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 RABGGTBP53611 331 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 ATP11AP98196 1134 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 KRT17Q04695 432 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 ADCY2Q08462 1091 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 CUL2Q13617 745 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 FAM160B1Q5W0V3 765 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 LBX2Q6XYB7 198 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 SLC13A5Q86YT5 568 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-215ENST00000552823 ZBTB8OSQ8IWT0 167 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 RNF169Q8NCN4 708 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 PIK3R5Q8WYR1 880 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 HSPH1Q92598 858 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 LRRC45Q96CN5 670 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 ERP44Q9BS26 406 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 STRA6Q9BX79 667 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 FAM49BQ9NUQ9 324 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 GPATCH2LQ9NWQ4 482 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 RBPJLQ9UBG7 517 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 CACNG4Q9UBN1 327 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 STXBP5LQ9Y2K9 1186 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms