RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	CCT4	P50991	539 aa	Known RBP	2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	TESK1	Q15569	626 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	PROSER3	Q2NL68	480 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	CCDC152	Q4G0S7	254 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	TMCO4	Q5TGY1	634 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	C6orf15	Q6UXA7	325 aa	Predicted RBP	2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	MCM10	Q7L590	875 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	COPS6	Q7L5N1	327 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	FAM83A	Q86UY5	434 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZNF227	Q86WZ6	799 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	OR6P1	Q8NGX9	317 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	PLBD2	Q8NHP8	589 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	PIP4K2C	Q8TBX8	421 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	RTF1	Q92541	710 aa	Known RBP	2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	USP6NL	Q92738	828 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	CRBN	Q96SW2	442 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	CDIP1	Q9H305	208 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	PPARGC1A	Q9UBK2	798 aa	Known RBP	2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZNF70	Q9UC06	446 aa	Predicted RBP	2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	COX11	Q9Y6N1	276 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	ATRNL1	Q5VV63	1379 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	XIRP2	A4UGR9	3374 aa		2.95	□□□□□ -1.94
PTCH1-223	ENST00000551623	CHD7	Q9P2D1	2997 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	CFAP54	Q96N23	3096 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	CHD6	Q8TD26	2715 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	TRANK1	O15050	2925 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	SMIM22	K7EJ46	135 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	DNM1L	O00429	736 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	PCCA	P05165	728 aa	Predicted RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	ITGAV	P06756	1048 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	HOXB7	P09629	217 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	LTBR	P36941	435 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	GRIA2	P42262	883 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	SCNN1G	P51170	649 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	TUSC3	Q13454	348 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	CNGB1	Q14028	1251 aa	Predicted RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	TOB2	Q14106	344 aa	Predicted RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	CFAP100	Q494V2	611 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	ACBD5	Q5T8D3	534 aa	Predicted RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	OLFML1	Q6UWY5	402 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZNF662	Q6ZS27	426 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	RHOU	Q7L0Q8	258 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	ANKRD18A	Q8IVF6	992 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	RBM12B	Q8IXT5	1001 aa	Known RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	NGEF	Q8N5V2	710 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	SLC25A43	Q8WUT9	341 aa	Predicted RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	HERVK_113	Q902F9	699 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	TRIB2	Q92519	343 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	COA7	Q96BR5	231 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	CDC5L	Q99459	802 aa	Known RBP	2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	APBA2	Q99767	749 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZDHHC5	Q9C0B5	715 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	TMEM39B	Q9GZU3	492 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	SYNPO2L	Q9H987	977 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	CD209	Q9NNX6	404 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	MORF4L1	Q9UBU8	362 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	KNSTRN	Q9Y448	316 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	PCDHAC2	Q9Y5I4	1007 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	MRVI1	Q9Y6F6	885 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZNF318	Q5VUA4	2279 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	SPTBN4	Q9H254	2564 aa		2.94	□□□□□ -1.94
PTCH1-223	ENST00000551623	BAHCC1	Q9P281	2608 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	MGAM	O43451	1857 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	CLRN2	A0PK11	232 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	GRID2IP	A4D2P6	1211 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	KIAA0355	O15063	1070 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	SMAD7	O15105	426 aa	Known RBP	2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	PDE8A	O60658	829 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	MSC	O60682	206 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	LTF	P02788	710 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	SCG5	P05408	212 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	ITGB8	P26012	769 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	KLRK1	P26718	216 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	GCLC	P48506	637 aa	Predicted RBP	2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	KCNQ1	P51787	676 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	DCTN1	Q14203	1278 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623		Q6ZRM9	215 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	LARP4	Q71RC2	724 aa	Known RBP eCLIP	2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	FASTKD5	Q7L8L6	764 aa	Known RBP	2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	RD3	Q7Z3Z2	195 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	PPIL6	Q8IXY8	311 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	ANKRD35	Q8N283	1001 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	TMEM145	Q8NBT3	493 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	CCDC191	Q8NCU4	936 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	SHCBP1	Q8NEM2	672 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	SOCS4	Q8WXH5	440 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZKSCAN4	Q969J2	545 aa	Predicted RBP	2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	PPP1R14A	Q96A00	147 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	LENG9	Q96B70	501 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	ANAPC16	Q96DE5	110 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	MRRF	Q96E11	262 aa	Known RBP	2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	THUMPD2	Q9BTF0	503 aa	Known RBP	2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	ANKRD2	Q9GZV1	360 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	TOR3A	Q9H497	397 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	VEZT	Q9HBM0	779 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	COG5	Q9UP83	839 aa		2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	UTY	O14607	1347 aa		2.93	□□□□□ -1.94

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