RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ANKRD44Q8N8A2 993 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 RCBTB1Q8NDN9 531 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 IDI2Q9BXS1 227 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 METTL5Q9NRN9 209 aaKnown RBP4.42□□□□□ -1.7
LIMA1-206ENST00000550611 TMOD2Q9NZR1 351 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 ASH2LQ9UBL3 628 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 ZFP69BQ9UJL9 534 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 CHD8Q9HCK8 2581 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 TRIM43BA6NCK2 446 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 TNPO2O14787 897 aaKnown RBP4.41□□□□□ -1.7
LIMA1-206ENST00000550611 MEFVO15553 781 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-206ENST00000550611 ENTPD3O75355 529 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 SCG5P05408 212 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 CKMP06732 381 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 NBPF7P0C2Y1 421 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-206ENST00000550611 ZNF888P0CJ79 500 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-206ENST00000550611 IL12RB1P42701 662 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 RFX5P48382 616 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-206ENST00000550611 COL10A1Q03692 680 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 EXOSC9Q06265 439 aaKnown RBP4.41□□□□□ -1.7
LIMA1-206ENST00000550611 TCP10Q12799 353 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 CCDC142Q17RM4 750 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 CCDC184Q52MB2 194 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 ZNF394Q53GI3 561 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 TAF7LQ5H9L4 462 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 PHF19Q5T6S3 580 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 MAP3K21Q5TCX8 1036 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 CCDC81Q6ZN84 652 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 VPS37DQ86XT2 251 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 WDR63Q8IWG1 891 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 SCYL3Q8IZE3 742 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 WDR66Q8TBY9 1149 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 TRIM43Q96BQ3 446 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-206ENST00000550611 CCSER2Q9H7U1 834 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 C9orf78Q9NZ63 289 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-206ENST00000550611 PCDHGB7Q9Y5F8 929 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 ZHX2Q9Y6X8 837 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 MAST3O60307 1309 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 SALL1Q9NSC2 1324 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 FANCIQ9NVI1 1328 aa4.41□□□□□ -1.7
LIMA1-206ENST00000550611 PKD1L2Q7Z442 2459 aa4.4□□□□□ -1.7
LIMA1-206ENST00000550611 OTOFQ9HC10 1997 aa4.4□□□□□ -1.7
LIMA1-206ENST00000550611 DNAH14Q0VDD8 3507 aa4.4□□□□□ -1.7
LIMA1-206ENST00000550611 DDTLA6NHG4 134 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-206ENST00000550611 H0Y858 1186 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 KRIT1O00522 736 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 CTNND1O60716 968 aaKnown RBP4.4□□□□□ -1.71
LIMA1-206ENST00000550611 CUTAO60888 179 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 FRAT2O75474 233 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-206ENST00000550611 KRT4P19013 534 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 PRDX5P30044 214 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 CCND3P30281 292 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-206ENST00000550611 HOXC12P31275 282 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 LTBRP36941 435 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 RPS19P39019 145 aaKnown RBP4.4□□□□□ -1.71
LIMA1-206ENST00000550611 SOX9P48436 509 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 FAM110CQ1W6H9 321 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 NAALADL2Q58DX5 795 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 METTL24Q5JXM2 366 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 AKNAD1Q5T1N1 836 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 KRT40Q6A162 431 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 Q6ZPA2 131 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 ATG9AQ7Z3C6 839 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 STPG3Q8N7X2 389 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 KREMEN2Q8NCW0 462 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 LPIN2Q92539 896 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 USP6NLQ92738 828 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 COA7Q96BR5 231 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 TIFAQ96CG3 184 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 RNPC3Q96LT9 517 aaKnown RBP4.4□□□□□ -1.71
LIMA1-206ENST00000550611 BICC1Q9H694 974 aaKnown RBP4.4□□□□□ -1.71
LIMA1-206ENST00000550611 DDX4Q9NQI0 724 aaKnown RBP4.4□□□□□ -1.71
LIMA1-206ENST00000550611 CLDND1Q9NY35 253 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 ARHGAP20Q9P2F6 1191 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 MORF4L1Q9UBU8 362 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 AGTPBP1Q9UPW5 1226 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 ATP11BQ9Y2G3 1177 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 PCDHA2Q9Y5H9 948 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 GAKO14976 1311 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 RFX7Q2KHR2 1363 aa4.4□□□□□ -1.71
LIMA1-206ENST00000550611 KMT2BQ9UMN6 2715 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 MGAMO43451 1857 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 PTPRZ1P23471 2315 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 EPG5Q9HCE0 2579 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 ARAP2Q8WZ64 1704 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 EYA2O00167 538 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 CDC14BO60729 498 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 PEX11BO96011 259 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 HMGCRP04035 888 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 IFIT1P09914 478 aaKnown RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 CYP2B6P20813 491 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 GCLCP48506 637 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 RGS3P49796 1198 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 RHBDL3P58872 404 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 RRP1BQ14684 758 aaKnown RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 PUM3Q15397 648 aaKnown RBP4.39□□□□□ -1.71
LIMA1-206ENST00000550611 RNF151Q2KHN1 245 aa4.39□□□□□ -1.71
LIMA1-206ENST00000550611 ZMAT1Q5H9K5 638 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms