RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 PITPNM1O00562 1244 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 RECQL4O94761 1208 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 CCDC175P0C221 793 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 GHRP10912 638 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 TBXAS1P24557 533 aaPredicted RBP19.09■□□□□ 0.65
CLIP1-215ENST00000541108 CD52P31358 61 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 KLHL30Q0D2K2 578 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 ARHGAP44Q17R89 818 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 SLC39A5Q6ZMH5 540 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 SMG8Q8ND04 991 aaKnown RBP19.09■□□□□ 0.65
CLIP1-215ENST00000541108 SHC3Q92529 594 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 TATDN2Q93075 761 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 FAM84AQ96KN4 292 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 TOX2Q96NM4 488 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 PI4K2AQ9BTU6 479 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 FAM105AQ9NUU6 356 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 HES2Q9Y543 173 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 PCDHB2Q9Y5E7 798 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 ADGRG1Q9Y653 693 aa19.09■□□□□ 0.65
CLIP1-215ENST00000541108 RALGAPA2Q2PPJ7 1873 aa19.08■□□□□ 0.65
CLIP1-215ENST00000541108 EIF3CLB5ME19 914 aaKnown RBP19.08■□□□□ 0.65
CLIP1-215ENST00000541108 FOXN3O00409 490 aaPredicted RBP19.08■□□□□ 0.65
CLIP1-215ENST00000541108 TLR3O15455 904 aaKnown RBP19.08■□□□□ 0.65
CLIP1-215ENST00000541108 ZNF623O75123 536 aa19.08■□□□□ 0.65
CLIP1-215ENST00000541108 ANXA13P27216 316 aa19.08■□□□□ 0.65
CLIP1-215ENST00000541108 RAB27AP51159 221 aa19.08■□□□□ 0.65
CLIP1-215ENST00000541108 ZBTB6Q15916 424 aa19.08■□□□□ 0.65
CLIP1-215ENST00000541108 ASTE1Q2TB18 679 aaPredicted RBP19.08■□□□□ 0.65
CLIP1-215ENST00000541108 TOGARAM2Q6ZUX3 1019 aa19.08■□□□□ 0.65
CLIP1-215ENST00000541108 KREMEN1Q96MU8 473 aa19.08■□□□□ 0.65
CLIP1-215ENST00000541108 EIF3CQ99613 913 aaKnown RBP19.08■□□□□ 0.65
CLIP1-215ENST00000541108 PPP2R2CQ9Y2T4 447 aa19.08■□□□□ 0.65
CLIP1-215ENST00000541108 GOLGA6L9A6NEM1 432 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 EVI5O60447 810 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 IPO7O95373 1038 aaKnown RBP19.08■□□□□ 0.64
CLIP1-215ENST00000541108 LCA5LO95447 670 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 PLEKP08567 350 aaPredicted RBP19.08■□□□□ 0.64
CLIP1-215ENST00000541108 COL6A1P12109 1028 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 KCNE1P15382 129 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 SELPP16109 830 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 ATICP31939 592 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 EIF4A3P38919 411 aaKnown RBP19.08■□□□□ 0.64
CLIP1-215ENST00000541108 NOP14P78316 857 aaKnown RBP19.08■□□□□ 0.64
CLIP1-215ENST00000541108 KRT83P78385 493 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 DSC3Q14574 896 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 TDRD12Q587J7 1177 aaKnown RBP19.08■□□□□ 0.64
CLIP1-215ENST00000541108 FAM71AQ8IYT1 594 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 C1orf127Q8N9H9 656 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 DEF6Q9H4E7 631 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 HAUS4Q9H6D7 363 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 ITGA11Q9UKX5 1188 aa19.08■□□□□ 0.64
CLIP1-215ENST00000541108 GFPT2O94808 682 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 SKIP12755 728 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 MYL6P60660 151 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 ARID5AQ03989 594 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 LRRC8DQ7L1W4 858 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 MRPL10Q7Z7H8 261 aaKnown RBP19.07■□□□□ 0.64
CLIP1-215ENST00000541108 C17orf53Q8N3J3 647 aaPredicted RBP19.07■□□□□ 0.64
CLIP1-215ENST00000541108 CXorf38Q8TB03 319 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 KIF12Q96FN5 646 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 OSBPL7Q9BZF2 842 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 XYLT2Q9H1B5 865 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 VRTNQ9H8Y1 702 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 DPP3Q9NY33 737 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 PARP2Q9UGN5 583 aa19.07■□□□□ 0.64
CLIP1-215ENST00000541108 A0A0U1RQF3 1178 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 XPOTO43592 962 aaKnown RBP19.06■□□□□ 0.64
CLIP1-215ENST00000541108 AKR1B10O60218 316 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 STAU1O95793 577 aaKnown RBP19.06■□□□□ 0.64
CLIP1-215ENST00000541108 AKAP5P24588 427 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 KIF11P52732 1056 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 PTK2Q05397 1052 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 CUL2Q13617 745 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 RNF39Q9H2S5 420 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 APOBEC3GQ9HC16 384 aaKnown RBP19.06■□□□□ 0.64
CLIP1-215ENST00000541108 SIX4Q9UIU6 781 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 UBQLN1Q9UMX0 589 aaKnown RBP19.06■□□□□ 0.64
CLIP1-215ENST00000541108 R3HCC1Q9Y3T6 440 aaKnown RBP19.06■□□□□ 0.64
CLIP1-215ENST00000541108 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.06■□□□□ 0.64
CLIP1-215ENST00000541108 TRIP11Q15643 1979 aa19.06■□□□□ 0.64
CLIP1-215ENST00000541108 SMIM28A0A1B0GU29 152 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 DCDC2CA8MYV0 355 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 RBAK-RBAKDNI3L0D1 243 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 ITGB3P05106 788 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 RBP5P82980 135 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 MBTPS1Q14703 1052 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 SPA17Q15506 151 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 VPS36Q86VN1 386 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 BEST2Q8NFU1 509 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 KAT5Q92993 513 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 ZMAT2Q96NC0 199 aaKnown RBP19.05■□□□□ 0.64
CLIP1-215ENST00000541108 DESI2Q9BSY9 194 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 APOL6Q9BWW8 343 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 FTHL17Q9BXU8 183 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 TRMT1Q9NXH9 659 aaKnown RBP19.05■□□□□ 0.64
CLIP1-215ENST00000541108 NUB1Q9Y5A7 615 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 PQBP1O60828 265 aaKnown RBP19.05■□□□□ 0.64
CLIP1-215ENST00000541108 OFD1O75665 1012 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 PARNO95453 639 aaKnown RBP19.05■□□□□ 0.64
CLIP1-215ENST00000541108 KRT19P08727 400 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms