RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CNTN3Q9P232 1028 aa15.47■□□□□ 0.07
SNHG1-213ENST00000540725 DNMT3BQ9UBC3 853 aaKnown RBP15.47■□□□□ 0.07
SNHG1-213ENST00000540725 KCNH3Q9ULD8 1083 aa15.47■□□□□ 0.07
SNHG1-213ENST00000540725 COL4A3Q01955 1670 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 DCNP07585 359 aaKnown RBP15.46■□□□□ 0.07
SNHG1-213ENST00000540725 RAD51AP2Q09MP3 1159 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 STRN3Q13033 797 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 RABEP1Q15276 862 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 HYIQ5T013 277 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 SLC8B1Q6J4K2 584 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 SPIRE2Q8WWL2 714 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 ING5Q8WYH8 240 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 C18orf25Q96B23 403 aaPredicted RBP15.46■□□□□ 0.07
SNHG1-213ENST00000540725 ZBTB45Q96K62 511 aaPredicted RBP15.46■□□□□ 0.07
SNHG1-213ENST00000540725 PNMA5Q96PV4 448 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 NTPCRQ9BSD7 190 aaKnown RBP15.46■□□□□ 0.07
SNHG1-213ENST00000540725 FOXQ1Q9C009 403 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 DLGAP2Q9P1A6 1054 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 ANKFY1Q9P2R3 1169 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 MRPS23Q9Y3D9 190 aaKnown RBP15.46■□□□□ 0.07
SNHG1-213ENST00000540725 SIT1Q9Y3P8 196 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 NUB1Q9Y5A7 615 aa15.46■□□□□ 0.07
SNHG1-213ENST00000540725 PATJQ8NI35 1801 aa15.46■□□□□ 0.06
SNHG1-213ENST00000540725 CEP250Q9BV73 2442 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 WDR27A2RRH5 827 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 SYN3O14994 580 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 MEFVO15553 781 aaPredicted RBP15.45■□□□□ 0.06
SNHG1-213ENST00000540725 TOM1L1O75674 476 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 PLS3P13797 630 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 ANK1P16157 1881 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 ELF1P32519 619 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 RPL9P32969 192 aaKnown RBP15.45■□□□□ 0.06
SNHG1-213ENST00000540725 STARD6P59095 220 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 NOLC1Q14978 699 aaKnown RBP eCLIP15.45■□□□□ 0.062e-19■■■■■ 32.2
SNHG1-213ENST00000540725 SYT2Q8N9I0 419 aaPredicted RBP15.45■□□□□ 0.06
SNHG1-213ENST00000540725 TMEM161BQ8NDZ6 487 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 PJA1Q8NG27 643 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 ZNF461Q8TAF7 563 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 SHDQ96IW2 340 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 PLIN2Q99541 437 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 KXD1Q9BQD3 176 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 GPR179Q6PRD1 2367 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 FRYLO94915 3013 aa15.45■□□□□ 0.06
SNHG1-213ENST00000540725 ARHGEF37A1IGU5 675 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 VWA3AA6NCI4 1184 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 PRRG1O14668 218 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 TBC1D4O60343 1298 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 ABLIM3O94929 683 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 LRG1P02750 347 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 RHOP08100 348 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 MAPTP10636 758 aaKnown RBP15.44■□□□□ 0.06
SNHG1-213ENST00000540725 SMTNP53814 917 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 ARPP19P56211 112 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 SLC5A9Q2M3M2 681 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 SEZ6Q53EL9 994 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 ADSSL1Q8N142 457 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 KCTD17Q8N5Z5 321 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 CDK5RAP3Q96JB5 506 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 KCNG1Q9UIX4 513 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 CACNA1AO00555 2505 aa15.44■□□□□ 0.06
SNHG1-213ENST00000540725 H7C4K7 107 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 PLA2G4BP0C869 781 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 ATF2P15336 505 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 SLC12A3P55017 1021 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 SNW1Q13573 536 aaKnown RBP15.43■□□□□ 0.06
SNHG1-213ENST00000540725 MRPL58Q14197 206 aaKnown RBP15.43■□□□□ 0.06
SNHG1-213ENST00000540725 MLF2Q15773 248 aaPredicted RBP15.43■□□□□ 0.06
SNHG1-213ENST00000540725 SLC10A6Q3KNW5 377 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 ZPBP2Q6X784 338 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 TCEAL8Q8IYN2 117 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 MCRS1Q96EZ8 462 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 TMX3Q96JJ7 454 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 SUSD3Q96L08 255 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 AVENQ9NQS1 362 aaPredicted RBP15.43■□□□□ 0.06
SNHG1-213ENST00000540725 GDE1Q9NZC3 331 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 KCND2Q9NZV8 630 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 FBXL5Q9UKA1 691 aa15.43■□□□□ 0.06
SNHG1-213ENST00000540725 NPHP3-ACAD11A0A0J9YXS1 232 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 KANSL1LA0AUZ9 987 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 H3BQV1 296 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 CLDN3O15551 220 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 LRRN2O75325 713 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 CXCL8P10145 99 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 GLULP15104 373 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 CEBPBP17676 345 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 PTPN2P17706 415 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 GJB2P29033 226 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 MCM4P33991 863 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 MATR3P43243 847 aaKnown RBP eCLIP15.42■□□□□ 0.06
SNHG1-213ENST00000540725 PFKPQ01813 784 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 CACNB1Q02641 598 aaPredicted RBP15.42■□□□□ 0.06
SNHG1-213ENST00000540725 PRKCQQ04759 706 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 MCL1Q07820 350 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 CTXN3Q4LDR2 81 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 TMEM119Q4V9L6 283 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 SLC44A4Q53GD3 710 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 ARL6IP4Q66PJ3 421 aaKnown RBP15.42■□□□□ 0.06
SNHG1-213ENST00000540725 ZNF280DQ6N043 979 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 C1orf210Q8IVY1 113 aa15.42■□□□□ 0.06
SNHG1-213ENST00000540725 TBC1D32Q96NH3 1257 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms