RNA–Protein interactions for RNA: ENST00000538253.5

PTPN22-211, Transcript of protein tyrosine phosphatase, non-receptor type 22, humanhuman

TSL 1 (best) BASIC

Gene PTPN22, Length 3,575 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22-211ENST00000538253 CDK5RAP1Q96SZ6 601 aaKnown RBP3.86□□□□□ -1.79
PTPN22-211ENST00000538253 PLEKHA4Q9H4M7 779 aa3.86□□□□□ -1.79
PTPN22-211ENST00000538253 RETREG1Q9H6L5 497 aa3.86□□□□□ -1.79
PTPN22-211ENST00000538253 XPNPEP1Q9NQW7 623 aa3.86□□□□□ -1.79
PTPN22-211ENST00000538253 MRPL17Q9NRX2 175 aaKnown RBP3.86□□□□□ -1.79
PTPN22-211ENST00000538253 ARMCX3Q9UH62 379 aaPredicted RBP3.86□□□□□ -1.79
PTPN22-211ENST00000538253 KLF15Q9UIH9 416 aa3.86□□□□□ -1.79
PTPN22-211ENST00000538253 RWDD2AQ9UIY3 292 aa3.86□□□□□ -1.79
PTPN22-211ENST00000538253 TRAF3IP3Q9Y228 551 aa3.86□□□□□ -1.79
PTPN22-211ENST00000538253 SCN10AQ9Y5Y9 1956 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 GRIN2DO15399 1336 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 CLUHO75153 1309 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ZNFX1Q9P2E3 1918 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 TRIM43BA6NCK2 446 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ZNF197O14709 1029 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 PMM2O15305 246 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 TIMM44O43615 452 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 STBD1O95210 358 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 HNRNPA1P09651 372 aaKnown RBP eCLIP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 POU3F3P20264 500 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 AFMP43652 599 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 TUFMP49411 452 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 MDM2Q00987 491 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 GPM6BQ13491 265 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 UGCGQ16739 394 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 EARS2Q5JPH6 523 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 MARCH8Q5T0T0 291 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ACBD5Q5T8D3 534 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 CES5AQ6NT32 575 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 C1orf228Q6PIY5 440 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 SHC4Q6S5L8 630 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 DYMQ7RTS9 669 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 CCDC91Q7Z6B0 441 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 IQCF2Q8IXL9 164 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 KIAA1958Q8N8K9 716 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ZNF557Q8N988 423 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 RNF169Q8NCN4 708 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ZNF397Q8NF99 534 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ASAP3Q8TDY4 903 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 TRIM43Q96BQ3 446 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 THOC1Q96FV9 657 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 CGRRF1Q99675 332 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 THAP9Q9H5L6 903 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 NSUN3Q9H649 340 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 BLOC1S4Q9NUP1 217 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ZNHIT6Q9NWK9 470 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ETAA1Q9NY74 926 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 KIAA1468Q9P260 1216 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 UXTQ9UBK9 157 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 MYMKA6NI61 221 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 C5orf67F2Z3F1 127 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 CHRNA1P02708 482 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ATP4AP20648 1035 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 MCM4P33991 863 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 PPP3CCP48454 512 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 GLUD2P49448 558 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 PSMC1P62191 440 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 AMPD2Q01433 879 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 TRIM14Q14142 442 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 PSMD6Q15008 389 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 E2F4Q16254 413 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 SGSM1Q2NKQ1 1148 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 PREPLQ4J6C6 727 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 SH3RF1Q7Z6J0 888 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 DDX53Q86TM3 631 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 TMEM192Q8IY95 271 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 FAM186BQ8IYM0 893 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 FMR1NBQ8N0W7 255 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ARHGAP18Q8N392 663 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 C1orf131Q8NDD1 294 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 NXPE3Q969Y0 559 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 EPSTI1Q96J88 318 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 MMTAG2Q9BU76 263 aaKnown RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 NUP58Q9BVL2 599 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 RUSC1Q9BVN2 902 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 YIPF2Q9BWQ6 316 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 EDEM3Q9BZQ6 932 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 SNX25Q9H3E2 840 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 GJB4Q9NTQ9 266 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 RBAKQ9NYW8 714 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 FNIP2Q9P278 1114 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 ANKFY1Q9P2R3 1169 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 FBXO9Q9UK97 447 aaPredicted RBP3.85□□□□□ -1.79
PTPN22-211ENST00000538253 PCDHB8Q9UN66 801 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 BACE2Q9Y5Z0 518 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 KIAA1217Q5T5P2 1943 aa3.85□□□□□ -1.79
PTPN22-211ENST00000538253 A0A0B4J269 797 aa3.84□□□□□ -1.79
PTPN22-211ENST00000538253 A0A1B0GVL5 298 aa3.84□□□□□ -1.79
PTPN22-211ENST00000538253 MED7O43513 233 aa3.84□□□□□ -1.79
PTPN22-211ENST00000538253 ACTN4O43707 911 aaKnown RBP3.84□□□□□ -1.79
PTPN22-211ENST00000538253 MYBL2P10244 700 aa3.84□□□□□ -1.79
PTPN22-211ENST00000538253 ARF4P18085 180 aaPredicted RBP3.84□□□□□ -1.79
PTPN22-211ENST00000538253 TNNI1P19237 187 aa3.84□□□□□ -1.79
PTPN22-211ENST00000538253 ANXA13P27216 316 aa3.84□□□□□ -1.79
PTPN22-211ENST00000538253 LRPAP1P30533 357 aa3.84□□□□□ -1.79
PTPN22-211ENST00000538253 MTIF2P46199 727 aaKnown RBP3.84□□□□□ -1.79
PTPN22-211ENST00000538253 ALDH1A3P47895 512 aa3.84□□□□□ -1.79
PTPN22-211ENST00000538253 NDUFV1P49821 464 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms