RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 CLSTN3Q9BQT9 956 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 REEP2Q9BRK0 252 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 TTPALQ9BTX7 342 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 RPP25Q9BUL9 199 aaKnown RBP13.62□□□□□ -0.23
PRKDC-207ENST00000536483 TARS2Q9BW92 718 aaKnown RBP13.62□□□□□ -0.23
PRKDC-207ENST00000536483 CDT1Q9H211 546 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 ARHGEF3Q9NR81 526 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 CCDC39Q9UFE4 941 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 FBXW11Q9UKB1 542 aa13.62□□□□□ -0.23
PRKDC-207ENST00000536483 TMEM189-UBE2V1I3L0A0 370 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 ZSCAN22P10073 491 aaPredicted RBP13.61□□□□□ -0.23
PRKDC-207ENST00000536483 GTF2BQ00403 316 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 FOXK2Q01167 660 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 MCL1Q07820 350 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 MCM6Q14566 821 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 PSMD5Q16401 504 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 DCLRE1AQ6PJP8 1040 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 MPZL3Q6UWV2 235 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 HAUS6Q7Z4H7 955 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 GPBP1Q86WP2 473 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 KCNG4Q8TDN1 519 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 PIK3R5Q8WYR1 880 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 FGF14Q92915 247 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 ZNF396Q96N95 335 aaPredicted RBP13.61□□□□□ -0.23
PRKDC-207ENST00000536483 CLIC6Q96NY7 704 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 PARVGQ9HBI0 331 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 FOXD4L1Q9NU39 408 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 SIT1Q9Y3P8 196 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 R4GN57 208 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 DOCK6Q96HP0 2047 aa13.61□□□□□ -0.23
PRKDC-207ENST00000536483 WDR87Q6ZQQ6 2873 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 NPHP3-ACAD11A0A0J9YXS1 232 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 CCL16O15467 120 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 ADAM12O43184 909 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 C8AP07357 584 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 KCNE1P15382 129 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 LIG1P18858 919 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 ID4P47928 161 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 GPC5P78333 572 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 RAD51AP2Q09MP3 1159 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 STRN3Q13033 797 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 PPM1LQ5SGD2 360 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 LIN9Q5TKA1 542 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 PHLDB3Q6NSJ2 640 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 PARM1Q6UWI2 310 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 CCDC73Q6ZRK6 1079 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 STRA6Q9BX79 667 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 FOXQ1Q9C009 403 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 SLC2A4RGQ9NR83 387 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 TOPORSQ9NS56 1045 aaPredicted RBP13.6□□□□□ -0.23
PRKDC-207ENST00000536483 DLGAP2Q9P1A6 1054 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 CDH7Q9ULB5 785 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 POLIQ9UNA4 740 aa13.6□□□□□ -0.23
PRKDC-207ENST00000536483 ZFP37Q9Y6Q3 630 aaPredicted RBP13.6□□□□□ -0.23
PRKDC-207ENST00000536483 DNAH14Q0VDD8 3507 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 SMIM28A0A1B0GU29 152 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 FRMD3A2A2Y4 597 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 SPTLC2O15270 562 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 TRAK2O60296 914 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 F13A1P00488 732 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 LMNAP02545 664 aaKnown RBP13.59□□□□□ -0.23
PRKDC-207ENST00000536483 ADRB2P07550 413 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 HNRNPA1P09651 372 aaKnown RBP eCLIP13.59□□□□□ -0.23
PRKDC-207ENST00000536483 IGFBP6P24592 240 aaPredicted RBP13.59□□□□□ -0.23
PRKDC-207ENST00000536483 TXLNAP40222 546 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 POU5F1Q01860 360 aaKnown RBP13.59□□□□□ -0.23
PRKDC-207ENST00000536483 ZNF568Q3ZCX4 644 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 RRAGBQ5VZM2 374 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 ITFG1Q8TB96 612 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 FGF13Q92913 245 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 DNAJC19Q96DA6 116 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 UROC1Q96N76 676 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 TSPAN18Q96SJ8 248 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 CCDC94Q9BW85 323 aaPredicted RBP13.59□□□□□ -0.23
PRKDC-207ENST00000536483 PLEKHA5Q9HAU0 1116 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 CNTN3Q9P232 1028 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 SEL1LQ9UBV2 794 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 TBX20Q9UMR3 447 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 GDAQ9Y2T3 454 aa13.59□□□□□ -0.23
PRKDC-207ENST00000536483 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.59□□□□□ -0.23
PRKDC-207ENST00000536483 CLDN3O15551 220 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 MEFVO15553 781 aaPredicted RBP13.58□□□□□ -0.24
PRKDC-207ENST00000536483 FAM189A1O60320 539 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 LRRN2O75325 713 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 PPP1R37O75864 691 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 FAM13AO94988 1023 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 SP9P0CG40 484 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 GLULP15104 373 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 ANP32AP39687 249 aaKnown RBP13.58□□□□□ -0.24
PRKDC-207ENST00000536483 YARSP54577 528 aaKnown RBP13.58□□□□□ -0.24
PRKDC-207ENST00000536483 STARD6P59095 220 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 CEBPZQ03701 1054 aaKnown RBP13.58□□□□□ -0.24
PRKDC-207ENST00000536483 ELAVL2Q12926 359 aaKnown RBP13.58□□□□□ -0.24
PRKDC-207ENST00000536483 SNW1Q13573 536 aaKnown RBP13.58□□□□□ -0.24
PRKDC-207ENST00000536483 KYAT1Q16773 422 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 GLRA4Q5JXX5 417 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 AXDND1Q5T1B0 1012 aaPredicted RBP13.58□□□□□ -0.24
PRKDC-207ENST00000536483 CNNM4Q6P4Q7 775 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 CD300LGQ6UXG3 332 aa13.58□□□□□ -0.24
PRKDC-207ENST00000536483 SV2BQ7L1I2 683 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms