RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, human

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-209	ENST00000519485	VIRMA	Q69YN4	1812 aa	Known RBP	4.23	□□□□□ -1.73
CSMD3-209	ENST00000519485	KDM5C	P41229	1560 aa		4.23	□□□□□ -1.73
CSMD3-209	ENST00000519485	SAMD9	Q5K651	1589 aa		4.23	□□□□□ -1.73
CSMD3-209	ENST00000519485	PTPRK	Q15262	1439 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	POLR2A	P24928	1970 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	SETD1B	Q9UPS6	1966 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	LCHN	A4D1U4	455 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	DNAJC9-AS1	A6NH13	148 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	DYNC1I1	O14576	645 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	OFD1	O75665	1012 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	CDKL5	O76039	1030 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	FOS	P01100	380 aa	Predicted RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	XRCC6	P12956	609 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	FDXR	P22570	491 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	CANX	P27824	592 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	CNGA1	P29973	690 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	SOX5	P35711	763 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	PHC1	P78364	1004 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	SIM1	P81133	766 aa	Predicted RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	HMGN5	P82970	282 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	APBA1	Q02410	837 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	REST	Q13127	1097 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	C19orf54	Q5BKX5	351 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	GPR158	Q5T848	1215 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	UTP14C	Q5TAP6	766 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	AGAP9	Q5VTM2	703 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	EFCAB12	Q6NXP0	572 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	LMBR1L	Q6UX01	489 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485		Q8N9P0	234 aa	Predicted RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	GAB3	Q8WWW8	586 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	SLC5A5	Q92911	643 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	IFT22	Q9H7X7	185 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	RRAGD	Q9NQL2	400 aa	Predicted RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	IBTK	Q9P2D0	1353 aa	Predicted RBP	4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	CADPS	Q9ULU8	1353 aa		4.22	□□□□□ -1.73
CSMD3-209	ENST00000519485	KIF16B	Q96L93	1317 aa		4.21	□□□□□ -1.73
CSMD3-209	ENST00000519485	CLASP1	Q7Z460	1538 aa		4.21	□□□□□ -1.73
CSMD3-209	ENST00000519485	PRSS38	A1L453	326 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	ULK1	O75385	1050 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	KIF20A	O95235	890 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	CLEC2L	P0C7M8	214 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	ITGAM	P11215	1152 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	PLA2G5	P39877	138 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	CACNA2D1	P54289	1103 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	NRG3	P56975	720 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	TMF1	P82094	1093 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	DHCR24	Q15392	516 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	NBPF8	Q3BBV2	869 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	ZBTB41	Q5SVQ8	909 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	CHAC2	Q8WUX2	184 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	RSAD2	Q8WXG1	361 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	NEU1	Q99519	415 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	GTPBP4	Q9BZE4	634 aa	Known RBP	4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	WNT8A	Q9H1J5	351 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	CAAP1	Q9H8G2	361 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	RNF181	Q9P0P0	153 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	MBD5	Q9P267	1494 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	DNMT1	P26358	1616 aa	Known RBP	4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	DAPK1	P53355	1430 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	SALL3	Q9BXA9	1300 aa		4.21	□□□□□ -1.74
CSMD3-209	ENST00000519485	DNMBP	Q6XZF7	1577 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	NKTR	P30414	1462 aa	Known RBP	4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	ZEB2	O60315	1214 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	GAST	P01350	101 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	LTA4H	P09960	611 aa	Known RBP	4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	CT47B1	P0C2W7	299 aa	Predicted RBP	4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	CPE	P16870	476 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	PPARA	Q07869	468 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	UBE3C	Q15386	1083 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	ANKS6	Q68DC2	871 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	RNF180	Q86T96	592 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	RASSF3	Q86WH2	238 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	THNSL2	Q86YJ6	484 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	GLB1L2	Q8IW92	636 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	RHOT2	Q8IXI1	618 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	ZFP28	Q8NHY6	868 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	SNX21	Q969T3	373 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	PDLIM2	Q96JY6	352 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	PPP1R9B	Q96SB3	815 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	CDC5L	Q99459	802 aa	Known RBP	4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	TMEM74B	Q9NUR3	256 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	FOXJ2	Q9P0K8	574 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	POGK	Q9P215	609 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	USP15	Q9Y4E8	981 aa	Predicted RBP	4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	NUMBL	Q9Y6R0	609 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485	LAMC1	P11047	1609 aa		4.2	□□□□□ -1.74
CSMD3-209	ENST00000519485		E9PCH4	1651 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	ADGB	Q8N7X0	1667 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	NPC1L1	Q9UHC9	1359 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	CGB1	A6NKQ9	187 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	NEMP1	O14524	444 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	PJA2	O43164	708 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	LETM1	O95202	739 aa	Predicted RBP	4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	TPM3	P06753	285 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	ID4	P47928	161 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	SESN3	P58005	492 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	FAM193A	P78312	1265 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	MGAT5	Q09328	741 aa		4.19	□□□□□ -1.74
CSMD3-209	ENST00000519485	CT83	Q5H943	113 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms