RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 RPS6P62753 249 aaKnown RBP13.88□□□□□ -0.19
TCOF1-213ENST00000514442 MIF4GDA9UHW6 222 aaKnown RBP13.88□□□□□ -0.19
TCOF1-213ENST00000514442 RASSF9O75901 435 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 ZBED1O96006 694 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 PRKCBP05771 671 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 RPS6KA3P51812 740 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 ZNF844Q08AG5 666 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 XRCC4Q13426 336 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 MED21Q13503 144 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 CHMP2BQ9UQN3 213 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 FAM205AQ6ZU69 1335 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 GMNNO75496 209 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 CACNA2D1P54289 1103 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 XKR3Q5GH77 459 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 RASSF3Q86WH2 238 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 OR6J1Q8NGC5 347 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 ROPN1BQ9BZX4 212 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-213ENST00000514442 ROPN1Q9HAT0 212 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-213ENST00000514442 RXFP1Q9HBX9 757 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 SUCLA2Q9P2R7 463 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-213ENST00000514442 SPDYE2BA6NHP3 402 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 MSH4O15457 936 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 HUS1O60921 280 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 FAM200BP0CF97 657 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 SPDYE6P0CI01 402 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 PRKCEQ02156 737 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 RNF139Q8WU17 664 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 PDE2AO00408 941 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-213ENST00000514442 DGAT1O75907 488 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 CAP2P40123 477 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 FXR2P51116 673 aaKnown RBP eCLIP13.87□□□□□ -0.191e-6■■■■□ 22.7
TCOF1-213ENST00000514442 BEST2Q8NFU1 509 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 DCLRE1BQ9H816 532 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 KCNQ5Q9NR82 932 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 DCTN4Q9UJW0 460 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 TNPO2O14787 897 aaKnown RBP13.87□□□□□ -0.19
TCOF1-213ENST00000514442 SMARCA1P28370 1054 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 ADORA2BP29275 332 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 PGM1P36871 562 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 ARFIP2P53365 341 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 PHEXP78562 749 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 CAV1Q03135 178 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 IRGCQ6NXR0 463 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 RGS9BPQ6ZS82 235 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 SNRNP27Q8WVK2 155 aaKnown RBP13.87□□□□□ -0.19
TCOF1-213ENST00000514442 MAML1Q92585 1016 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 PRCCQ92733 491 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-213ENST00000514442 KIF12Q96FN5 646 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 TRAPPC9Q96Q05 1148 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 CCDC68Q9H2F9 335 aa13.87□□□□□ -0.19
TCOF1-213ENST00000514442 ESYT2A0FGR8 921 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 PLEKP08567 350 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 IL1R1P14778 569 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 ANXA13P27216 316 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 TMEM62Q0P6H9 643 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 NTRK3Q16288 839 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 RWDD4Q6NW29 188 aaKnown RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 RAPH1Q70E73 1250 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 TARSP26639 723 aaKnown RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 RFC5P40937 340 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 MREGQ8N565 214 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 DCLK2Q8N568 766 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 RBBP8NLQ8NC74 664 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 ICA1LQ8NDH6 482 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 ITFG2Q969R8 447 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 GCOM2Q9BZD3 368 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 PIK3R2O00459 728 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 ATP9AO75110 1047 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 TBXAS1P24557 533 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 EMC2Q15006 297 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 LONRF1Q17RB8 773 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 TRMT10CQ7L0Y3 403 aaKnown RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 RYBPQ8N488 228 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 DAGLBQ8NCG7 672 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 ERGIC2Q96RQ1 377 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 KIFC3Q9BVG8 833 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 HEY1Q9Y5J3 304 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 DYNC1LI2O43237 492 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 SLC9A1P19634 815 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 RPS12P25398 132 aaKnown RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 RPA1P27694 616 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 PSMC1P62191 440 aaKnown RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 TAF1CQ15572 869 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 LACTB2Q53H82 288 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 SCN4BQ8IWT1 228 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 FAM192AQ9GZU8 254 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 GINM1Q9NU53 330 aa13.86□□□□□ -0.19
TCOF1-213ENST00000514442 TTC7AQ9ULT0 858 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-213ENST00000514442 SALL1Q9NSC2 1324 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 F5H423 210 aaPredicted RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 AGPSO00116 658 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 GARSP41250 739 aaKnown RBP13.85□□□□□ -0.19
TCOF1-213ENST00000514442 GRB10Q13322 594 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 RCN1Q15293 331 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 LRRC71Q8N4P6 559 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 SLC16A10Q8TF71 515 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 UNC45AQ9H3U1 944 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 PLAGL2Q9UPG8 496 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 ATP8B3O60423 1300 aa13.85□□□□□ -0.19
TCOF1-213ENST00000514442 GOLGA8MH3BSY2 632 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms