RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 TDRD10Q5VZ19 366 aaKnown RBP7.78□□□□□ -1.16
NUP54-204ENST00000506098 SMYD5Q6GMV2 418 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 GBP6Q6ZN66 633 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 TRAPPC11Q7Z392 1133 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 NPAS4Q8IUM7 802 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 VSTM4Q8IW00 320 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 EHBP1Q8NDI1 1231 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 FBXL13Q8NEE6 735 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 OR5B17Q8NGF7 314 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 LPPQ93052 612 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 TOP1MTQ969P6 601 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 FAM212AQ96EL1 285 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 KIF12Q96FN5 646 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 FAXDC2Q96IV6 333 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 APOL6Q9BWW8 343 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 PLCB1Q9NQ66 1216 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 KANSL3Q9P2N6 904 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 UBQLN1Q9UMX0 589 aaKnown RBP7.78□□□□□ -1.16
NUP54-204ENST00000506098 DAAM1Q9Y4D1 1078 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 PCDHB7Q9Y5E2 793 aa7.78□□□□□ -1.16
NUP54-204ENST00000506098 PLXNA3P51805 1871 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 ANO9A1A5B4 782 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 HOXA2O43364 376 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 ZC3H11AO75152 810 aaKnown RBP eCLIP7.77□□□□□ -1.17
NUP54-204ENST00000506098 STAU1O95793 577 aaKnown RBP7.77□□□□□ -1.17
NUP54-204ENST00000506098 CST3P01034 146 aaPredicted RBP7.77□□□□□ -1.17
NUP54-204ENST00000506098 HLA-DRAP01903 254 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 FGBP02675 491 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 THP07101 528 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 NFICP08651 508 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 TMEM191BP0C7N4 346 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 ACRP10323 421 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 SLC9A1P19634 815 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 PON1P27169 355 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 LRPAP1P30533 357 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 MLH1P40692 756 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 RGS19P49795 217 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 WDR5P61964 334 aaKnown RBP7.77□□□□□ -1.17
NUP54-204ENST00000506098 MYL7Q01449 175 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 CETN1Q12798 172 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 GRIK3Q13003 919 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 TBX2Q13207 712 aaPredicted RBP7.77□□□□□ -1.17
NUP54-204ENST00000506098 EXOC3L4Q17RC7 722 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 FIGNQ5HY92 759 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 LMBRD2Q68DH5 695 aaPredicted RBP7.77□□□□□ -1.17
NUP54-204ENST00000506098 PSRC1Q6PGN9 363 aaPredicted RBP7.77□□□□□ -1.17
NUP54-204ENST00000506098 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.77□□□□□ -1.17
NUP54-204ENST00000506098 ZNF365Q70YC5 407 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 MTERF4Q7Z6M4 381 aaKnown RBP7.77□□□□□ -1.17
NUP54-204ENST00000506098 C1orf127Q8N9H9 656 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 BEST2Q8NFU1 509 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 HERVK_113Q902F9 699 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 TAF4BQ92750 862 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 DPF3Q92784 378 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 ZNF689Q96CS4 500 aaPredicted RBP7.77□□□□□ -1.17
NUP54-204ENST00000506098 IQCDQ96DY2 449 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 PDLIM2Q96JY6 352 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 ZFP42Q96MM3 310 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 CASD1Q96PB1 797 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 RPS6KC1Q96S38 1066 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 GAD1Q99259 594 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 NUP58Q9BVL2 599 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 EDEM3Q9BZQ6 932 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 MTMR12Q9C0I1 747 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 VRTNQ9H8Y1 702 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 SIX2Q9NPC8 291 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 SLC38A7Q9NVC3 462 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 RAB20Q9NX57 234 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 DPP3Q9NY33 737 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 KLK14Q9P0G3 267 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 SIX4Q9UIU6 781 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 FBXL5Q9UKA1 691 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 ITGA11Q9UKX5 1188 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 NR2E3Q9Y5X4 410 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 ANAPC1Q9H1A4 1944 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 MYO16Q9Y6X6 1858 aa7.77□□□□□ -1.17
NUP54-204ENST00000506098 A0A1W2PQJ5 194 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 PES1O00541 588 aaKnown RBP7.76□□□□□ -1.17
NUP54-204ENST00000506098 PIRO00625 290 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 DGKIO75912 1065 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 NOL4O94818 638 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 ASS1P00966 412 aaKnown RBP7.76□□□□□ -1.17
NUP54-204ENST00000506098 AMHP03971 560 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 SYN1P17600 705 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 ATICP31939 592 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 RPL9P32969 192 aaKnown RBP7.76□□□□□ -1.17
NUP54-204ENST00000506098 SCNN1GP51170 649 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 AFF1P51825 1210 aaKnown RBP7.76□□□□□ -1.17
NUP54-204ENST00000506098 EPHB4P54760 987 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 TFAMQ00059 246 aaKnown RBP7.76□□□□□ -1.17
NUP54-204ENST00000506098 SOX4Q06945 474 aaPredicted RBP7.76□□□□□ -1.17
NUP54-204ENST00000506098 SLC20A2Q08357 652 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 DSC1Q08554 894 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 TUSC3Q13454 348 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 NCOA4Q13772 614 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 SYCP1Q15431 976 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 SGSM1Q2NKQ1 1148 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 NOMO2Q5JPE7 1267 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 RASIP1Q5U651 963 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 KLHDC7AQ5VTJ3 777 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms