RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 KRBA2Q6ZNG9 492 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 RBM43Q6ZSC3 357 aaKnown RBP19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 IQUBQ8NA54 791 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 TMEM161BQ8NDZ6 487 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 CLSTN3Q9BQT9 956 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 TNMDQ9H2S6 317 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 WDR6Q9NNW5 1121 aaKnown RBP19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 ZDHHC7Q9NXF8 308 aa19.65■□□□□ 0.74
SQSTM1-209ENST00000504627 MYO10Q9HD67 2058 aa19.64■□□□□ 0.74
SQSTM1-209ENST00000504627 A0A087X0B3 334 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 TMEM189-UBE2V1I3L0A0 370 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 ACTN4O43707 911 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 TOM1L1O75674 476 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 KRT18P05783 430 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 MAPTP10636 758 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 PROZP22891 400 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 E2F4Q16254 413 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 UPP1Q16831 310 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 LIN9Q5TKA1 542 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 GPBP1Q86WP2 473 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 BICD1Q96G01 975 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 DDX27Q96GQ7 796 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 ZBTB45Q96K62 511 aaPredicted RBP19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 RHOBTB2Q9BYZ6 727 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 PRKD2Q9BZL6 878 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 CUEDC2Q9H467 287 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 MAGEF1Q9HAY2 307 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 HOOK1Q9UJC3 728 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 ODF2LQ9ULJ1 636 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 CLUHO75153 1309 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 PLXNA3P51805 1871 aa19.64■□□□□ 0.73
SQSTM1-209ENST00000504627 CLDN3O15551 220 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 ZMYND10O75800 440 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 STAT6P42226 847 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 NOLC1Q14978 699 aaKnown RBP eCLIP19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 KARSQ15046 597 aaKnown RBP19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 ARSHQ5FYA8 562 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 XKR4Q5GH76 650 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 ALKAL1Q6UXT8 129 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 MYCT1Q8N699 235 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 PDILTQ8N807 584 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 DHX58Q96C10 678 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 ZNF707Q96C28 371 aaPredicted RBP19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 SNX27Q96L92 541 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 SMOC2Q9H3U7 446 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 STK17AQ9UEE5 414 aa19.63■□□□□ 0.73
SQSTM1-209ENST00000504627 PODXLO00592 558 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 FAM13AO94988 1023 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 SLFN14P0C7P3 912 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 PLCG1P19174 1290 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 OR1D2P34982 312 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 SOX4Q06945 474 aaPredicted RBP19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 MCM6Q14566 821 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 PPM1LQ5SGD2 360 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 RRAGBQ5VZM2 374 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 ZPBP2Q6X784 338 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 HAUS6Q7Z4H7 955 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 CEP57L1Q8IYX8 460 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 ZMAT2Q96NC0 199 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 PRRX2Q99811 253 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 REEP2Q9BRK0 252 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 GZF1Q9H116 711 aaPredicted RBP19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 ZHX3Q9H4I2 956 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 CNTN3Q9P232 1028 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 FBXW11Q9UKB1 542 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 NUB1Q9Y5A7 615 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 ZDBF2Q9HCK1 2354 aa19.62■□□□□ 0.73
SQSTM1-209ENST00000504627 C2orf16Q68DN1 1984 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 ABLIM1O14639 778 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 PDGFBP01127 241 aaPredicted RBP19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 C8AP07357 584 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 KCNE1P15382 129 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 FGFR3P22607 806 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 IGFBP6P24592 240 aaPredicted RBP19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 BRCC3P46736 316 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 NCKAP1LP55160 1127 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 ZNF445P59923 1031 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 TDGQ13569 410 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 SEZ6Q53EL9 994 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 IER5LQ5T953 404 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 ANKS3Q6ZW76 656 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 C3orf58Q8NDZ4 430 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 RAD54LQ92698 747 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 MFSD1Q9H3U5 465 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 KCNK12Q9HB15 430 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 PARVGQ9HBI0 331 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 IGSF9Q9P2J2 1179 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 ZNF318Q5VUA4 2279 aa19.61■□□□□ 0.73
SQSTM1-209ENST00000504627 DENND4AQ7Z401 1863 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 I3L4J1 428 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 K7ENM7 598 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 ADAM12O43184 909 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 N4BP1O75113 896 aaKnown RBP19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 TBCAO75347 108 aaKnown RBP19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 TKTP29401 623 aaKnown RBP19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 AVPR2P30518 371 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 LIG4P49917 911 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 MCL1Q07820 350 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 CAMK4Q16566 473 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms