RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 PCBP3P57721 371 aaKnown RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 DSTNP60981 165 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 DDR1Q08345 913 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 USH1GQ495M9 461 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SV2CQ496J9 727 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 MTERF2Q49AM1 385 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 INTS3Q68E01 1043 aaKnown RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 XRRA1Q6P2D8 792 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 POMZP3Q6PJE2 187 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 C1orf122Q6ZSJ8 110 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 NLRP9Q7RTR0 991 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ATG9AQ7Z3C6 839 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ZER1Q7Z7L7 766 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 GALNT5Q7Z7M9 940 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ZBTB46Q86UZ6 589 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TPH2Q8IWU9 490 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ADGRG2Q8IZP9 1017 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TMEM57Q8N5G2 664 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 DAGLBQ8NCG7 672 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 OR8K1Q8NGG5 319 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 OR52K2Q8NGK3 314 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SMARCC2Q8TAQ2 1214 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 NPLOC4Q8TAT6 608 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 GDAP1Q8TB36 358 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 PANK1Q8TE04 598 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 MAP6Q96JE9 813 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 C7orf25Q9BPX7 421 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 NUDT16L1Q9BRJ7 211 aaKnown RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 UPF3BQ9BZI7 483 aaKnown RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 BLOC1S4Q9NUP1 217 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SIRT5Q9NXA8 310 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 LIMCH1Q9UPQ0 1083 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 NPC1L1Q9UHC9 1359 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SSU72P8A0A1W2PR75 194 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 CETN3O15182 167 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 PDE8AO60658 829 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 C8AP07357 584 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ZNF3P17036 446 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ANXA13P27216 316 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 PBLDP30039 288 aaPredicted RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 GDNFP39905 211 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TUFMP49411 452 aaKnown RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 GTF2A2P52657 109 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TUBA4AP68366 448 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 GBE1Q04446 702 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 AP1B1Q10567 949 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 CUL3Q13618 768 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 NFE2L1Q14494 772 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SAFBQ15424 915 aaKnown RBP eCLIP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ELF2Q15723 593 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 CCDC57Q2TAC2 916 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SETMARQ53H47 684 aaPredicted RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 LCE1DQ5T752 114 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 FAM173BQ6P4H8 233 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 DBX2Q6ZNG2 339 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 FAM47EQ6ZV65 393 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 OTOP3Q7RTS5 596 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TMPRSS7Q7RTY8 843 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 RALYLQ86SE5 291 aaKnown RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TADA2BQ86TJ2 420 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ITPRIPQ8IWB1 547 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SLC15A3Q8IY34 581 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SPARTQ8N0X7 666 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 RBBP8NLQ8NC74 664 aaPredicted RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 LINC00116Q8NCU8 138 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 SMC1BQ8NDV3 1235 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 PPP1R14CQ8TAE6 165 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 FATE1Q969F0 183 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TRIM63Q969Q1 353 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 GORASP1Q9BQQ3 440 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TEX13BQ9BXU2 312 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 EIF2AQ9BY44 585 aaKnown RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 BHMT2Q9H2M3 363 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 CAAP1Q9H8G2 361 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 TBC1D22BQ9NU19 505 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 PPP1R14DQ9NXH3 145 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 RRN3Q9NYV6 651 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 WDR35Q9P2L0 1181 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 AGO2Q9UKV8 859 aaKnown RBP3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 KIAA1257Q9ULG3 409 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 GRID1Q9ULK0 1009 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 CARMIL1Q5VZK9 1371 aa3.36□□□□□ -1.87
SNRNP48-202ENST00000496946 ATAD2BQ9ULI0 1458 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 WDR62O43379 1518 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 C17orf113A0A1B0GUU1 675 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 GOLGA6L7A0A1B0GV03 622 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CCDC169A6NNP5 214 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 INO80B-WBP1J3KQ70 363 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 YKT6O15498 198 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 STX6O43752 255 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 RNF8O76064 485 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 THBDP07204 575 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 PNMA6AP0CW24 399 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 UBL4AP11441 157 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 GALNSP34059 522 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CCT6AP40227 531 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 HAAOP46952 286 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 RXRGP48443 463 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CTCFP49711 727 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 PLTPP55058 493 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms