RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 PRIMA1Q86XR5 153 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 CCAR1Q8IX12 1150 aaKnown RBP5.68□□□□□ -1.5
SMC4-224ENST00000494612 SYNE4Q8N205 404 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 PRR18Q8N4B5 295 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 LILRA3Q8N6C8 439 aaPredicted RBP5.68□□□□□ -1.5
SMC4-224ENST00000494612 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.68□□□□□ -1.5
SMC4-224ENST00000494612 PROKR1Q8TCW9 393 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 DIS3LQ8TF46 1054 aaKnown RBP5.68□□□□□ -1.5
SMC4-224ENST00000494612 ZNF480Q8WV37 535 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 CLPTM1LQ96KA5 538 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 TAAR9Q96RI9 348 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 SENP6Q9GZR1 1112 aaPredicted RBP5.68□□□□□ -1.5
SMC4-224ENST00000494612 EPC1Q9H2F5 836 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 TDP1Q9NUW8 608 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 GPRC5DQ9NZD1 345 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 ZNHIT2Q9UHR6 403 aa5.68□□□□□ -1.5
SMC4-224ENST00000494612 RUVBL1Q9Y265 456 aaKnown RBP5.68□□□□□ -1.5
SMC4-224ENST00000494612 FRMPD2Q68DX3 1309 aaPredicted RBP5.68□□□□□ -1.5
SMC4-224ENST00000494612 ZMYM3Q14202 1370 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 FAM171A2A8MVW0 826 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 HOXA3O43365 443 aaPredicted RBP5.67□□□□□ -1.5
SMC4-224ENST00000494612 DTNBO60941 627 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 PHF2O75151 1096 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 ABHD16AO95870 558 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 U2AF1L5P0DN76 240 aaPredicted RBP5.67□□□□□ -1.5
SMC4-224ENST00000494612 SREBF1P36956 1147 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 GNALP38405 381 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 U2AF1Q01081 240 aaKnown RBP eCLIP5.67□□□□□ -1.55e-12■■■■■ 47.2
SMC4-224ENST00000494612 MEF2AQ02078 507 aaPredicted RBP5.67□□□□□ -1.5
SMC4-224ENST00000494612 DSC2Q02487 901 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 PTPAQ15257 358 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 MST1LQ2TV78 715 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 METTL24Q5JXM2 366 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 PRAMEF14Q5SWL7 426 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 SYCE2Q6PIF2 218 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 LRRC55Q6ZSA7 311 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 DRC7Q8IY82 874 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 ZGPATQ8N5A5 531 aaKnown RBP5.67□□□□□ -1.5
SMC4-224ENST00000494612 SH2D3CQ8N5H7 860 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 NTN5Q8WTR8 489 aaPredicted RBP5.67□□□□□ -1.5
SMC4-224ENST00000494612 HOXB13Q92826 284 aaPredicted RBP5.67□□□□□ -1.5
SMC4-224ENST00000494612 PAWRQ96IZ0 340 aaKnown RBP5.67□□□□□ -1.5
SMC4-224ENST00000494612 TMX3Q96JJ7 454 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 VRK1Q99986 396 aaPredicted RBP5.67□□□□□ -1.5
SMC4-224ENST00000494612 ARMT1Q9H993 441 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 SORCS3Q9UPU3 1222 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 PCDHA3Q9Y5H8 950 aa5.67□□□□□ -1.5
SMC4-224ENST00000494612 FTLP02792 175 aaPredicted RBP5.66□□□□□ -1.5
SMC4-224ENST00000494612 GNAT2P19087 354 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 HK1P19367 917 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 FPR1P21462 350 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 WASP42768 502 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 C21orf58P58505 322 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 KRTAP10-9P60411 292 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 TARDBPQ13148 414 aaKnown RBP eCLIP5.66□□□□□ -1.5
SMC4-224ENST00000494612 FAM214AQ32MH5 1076 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 KHDC1Q4VXA5 237 aaKnown RBP5.66□□□□□ -1.5
SMC4-224ENST00000494612 PPP4R4Q6NUP7 873 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 CCDC146Q8IYE0 955 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 OR7D4Q8NG98 312 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 RUNDC1Q96C34 613 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 CDC5LQ99459 802 aaKnown RBP5.66□□□□□ -1.5
SMC4-224ENST00000494612 CGRRF1Q99675 332 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 GEMIN8Q9NWZ8 242 aaKnown RBP5.66□□□□□ -1.5
SMC4-224ENST00000494612 AJAP1Q9UKB5 411 aaPredicted RBP5.66□□□□□ -1.5
SMC4-224ENST00000494612 FAM50BQ9Y247 325 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 ACTL7AQ9Y615 435 aa5.66□□□□□ -1.5
SMC4-224ENST00000494612 MYBBP1AQ9BQG0 1328 aaKnown RBP5.66□□□□□ -1.5
SMC4-224ENST00000494612 A6NNZ2 444 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 AHRRA9YTQ3 701 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 TRIM24O15164 1050 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 PPFIA4O75335 1185 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 ENDOD1O94919 500 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 MAP4K4O95819 1239 aaPredicted RBP5.65□□□□□ -1.5
SMC4-224ENST00000494612 AMY1AP04745 511 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 MAP2K6P52564 334 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 ZNF280AP59817 542 aaPredicted RBP5.65□□□□□ -1.5
SMC4-224ENST00000494612 APBA1Q02410 837 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 PPP4R3AQ6IN85 833 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 COL23A1Q86Y22 540 aaPredicted RBP5.65□□□□□ -1.5
SMC4-224ENST00000494612 TRMT2AQ8IZ69 625 aaKnown RBP5.65□□□□□ -1.5
SMC4-224ENST00000494612 CPT1CQ8TCG5 803 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 C1GALT1C1Q96EU7 318 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 TOR3AQ9H497 397 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 ZNF768Q9H5H4 540 aaKnown RBP5.65□□□□□ -1.5
SMC4-224ENST00000494612 MANSC1Q9H8J5 431 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 SYNPO2LQ9H987 977 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 BCO1Q9HAY6 547 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 LANCL2Q9NS86 450 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 NR2E3Q9Y5X4 410 aa5.65□□□□□ -1.5
SMC4-224ENST00000494612 ERC2O15083 957 aa5.64□□□□□ -1.51
SMC4-224ENST00000494612 B3GALT2O43825 422 aa5.64□□□□□ -1.51
SMC4-224ENST00000494612 UBXN7O94888 489 aa5.64□□□□□ -1.51
SMC4-224ENST00000494612 KRT18P05783 430 aaKnown RBP5.64□□□□□ -1.51
SMC4-224ENST00000494612 RAP2AP10114 183 aa5.64□□□□□ -1.51
SMC4-224ENST00000494612 GYPEP15421 78 aa5.64□□□□□ -1.51
SMC4-224ENST00000494612 DDCP20711 480 aa5.64□□□□□ -1.51
SMC4-224ENST00000494612 PCSK1P29120 753 aa5.64□□□□□ -1.51
SMC4-224ENST00000494612 WNT3AP56704 352 aa5.64□□□□□ -1.51
SMC4-224ENST00000494612 MAP9Q49MG5 647 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms