RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 ITGA11Q9UKX5 1188 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 UBQLN1Q9UMX0 589 aaKnown RBP12.3□□□□□ -0.44
MCF2L-231ENST00000494043 DAAM1Q9Y4D1 1078 aa12.3□□□□□ -0.44
MCF2L-231ENST00000494043 TET1Q8NFU7 2136 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 AKR1B15C9JRZ8 316 aaPredicted RBP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 INPPL1O15357 1258 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 XPOTO43592 962 aaKnown RBP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 ZC3H11AO75152 810 aaKnown RBP eCLIP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 LRRN2O75325 713 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 PFKMP08237 780 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 UCHL3P15374 230 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 CSF2RAP15509 400 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 RFX1P22670 979 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 CASP14P31944 242 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 FXR1P51114 621 aaKnown RBP eCLIP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 GUCY2FP51841 1108 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 TRPC3Q13507 836 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 IKBKEQ14164 716 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 CCDC186Q7Z3E2 898 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 RPUSD2Q8IZ73 545 aaKnown RBP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 TMEM130Q8N3G9 435 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 GSTCDQ8NEC7 633 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 CXorf38Q8TB03 319 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 C18orf25Q96B23 403 aaPredicted RBP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 NT5C1BQ96P26 610 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 PPP1R10Q96QC0 940 aaKnown RBP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 EDEM3Q9BZQ6 932 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 RNF19AQ9NV58 838 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 SLC38A7Q9NVC3 462 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 APEX2Q9UBZ4 518 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 TUBGCP4Q9UGJ1 667 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 CAPN11Q9UMQ6 739 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 PLAGL2Q9UPG8 496 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 FHOD1Q9Y613 1164 aa12.29□□□□□ -0.44
MCF2L-231ENST00000494043 PDCD11Q14690 1871 aaKnown RBP12.29□□□□□ -0.44
MCF2L-231ENST00000494043 ABHD14A-ACY1A0A1B0GW23 586 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 CCDC85CA6NKD9 419 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 RNF225M0QZC1 329 aaPredicted RBP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 MFAP3LO75121 409 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 OFD1O75665 1012 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 ASS1P00966 412 aaKnown RBP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 CST3P01034 146 aaPredicted RBP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 ITGB3P05106 788 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 CYP3A5P20815 502 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 POLR2BP30876 1174 aaKnown RBP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 SCNN1GP51170 649 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 MYL6P60660 151 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 POLR2FP61218 127 aaKnown RBP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 RBP5P82980 135 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 ZBED6P86452 979 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 LRMPQ12912 555 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 PPIGQ13427 754 aaKnown RBP eCLIP12.28□□□□□ -0.445e-15■■■■□ 20.7
MCF2L-231ENST00000494043 WDR44Q5JSH3 913 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 CLLU1OSQ5K130 101 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 SCARA3Q6AZY7 606 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 IQCEQ6IPM2 695 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 PHLDB3Q6NSJ2 640 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 GJB7Q6PEY0 223 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 GLB1LQ6UWU2 654 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 CACNA2D4Q7Z3S7 1137 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 NPAS4Q8IUM7 802 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 CNGA4Q8IV77 575 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 ARHGEF19Q8IW93 802 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 TC2NQ8N9U0 490 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 CCDC150Q8NCX0 1101 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 CPLX3Q8WVH0 158 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 BAP1Q92560 729 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 PI4K2AQ9BTU6 479 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 NAA15Q9BXJ9 866 aaKnown RBP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 IMPG2Q9BZV3 1241 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 IL23AQ9NPF7 189 aa12.28□□□□□ -0.44
MCF2L-231ENST00000494043 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 AJAP1Q9UKB5 411 aaPredicted RBP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 LUC7L2Q9Y383 392 aaKnown RBP12.28□□□□□ -0.44
MCF2L-231ENST00000494043 EFCAB14O75071 495 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 THP07101 528 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 KRT19P08727 400 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 FGFR1P11362 822 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 ATICP31939 592 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 AFF1P51825 1210 aaKnown RBP12.27□□□□□ -0.45
MCF2L-231ENST00000494043 ADKP55263 362 aaKnown RBP12.27□□□□□ -0.45
MCF2L-231ENST00000494043 NOP14P78316 857 aaKnown RBP12.27□□□□□ -0.45
MCF2L-231ENST00000494043 GCNT1Q02742 428 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 SOX4Q06945 474 aaPredicted RBP12.27□□□□□ -0.45
MCF2L-231ENST00000494043 GOLGA8FQ08AF8 430 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 GOLGA8DPQ0D2H9 430 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 GRIK3Q13003 919 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 ARID5BQ14865 1188 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 NAB2Q15742 525 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 SGSM1Q2NKQ1 1148 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 ZNF699Q32M78 642 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 SPOPLQ6IQ16 392 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 PDXDC1Q6P996 788 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 CRIPAKQ8N1N5 446 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 ZNF397Q8NF99 534 aaPredicted RBP12.27□□□□□ -0.45
MCF2L-231ENST00000494043 HELQQ8TDG4 1101 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 TAF4BQ92750 862 aa12.27□□□□□ -0.45
MCF2L-231ENST00000494043 BADQ92934 168 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms