RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 PCDHA10Q9Y5I2 948 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 A0A1W2PRQ8 180 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 TLR3O15455 904 aaKnown RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 B4GALT4O60513 344 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 DNAJC8O75937 253 aaPredicted RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 VIMP08670 466 aaKnown RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 CLTBP09497 229 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 OR52Z1P0C646 297 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 LINGO3P0C6S8 592 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 IBSPP21815 317 aaPredicted RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 SFNP31947 248 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 ETV3P41162 512 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 STAT5BP51692 787 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 SULT2A1Q06520 285 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 RESTQ13127 1097 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 ORC2Q13416 577 aaPredicted RBP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 C1orf53Q5VUE5 145 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 SWSAP1Q6NVH7 229 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 PDXDC2PQ6P474 469 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 NFRKBQ6P4R8 1299 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 ABHD15Q6UXT9 468 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 SND1Q7KZF4 910 aaKnown RBP eCLIP12.39□□□□□ -0.43
BRCA1-222ENST00000493919 DGLUCYQ7Z3D6 616 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 LUZP1Q86V48 1076 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 FAM126BQ8IXS8 530 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 CKAP2LQ8IYA6 745 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 TRIML2Q8N7C3 387 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 TRPV6Q9H1D0 765 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 ZNF302Q9NR11 478 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 KCTD5Q9NXV2 234 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 NR2E3Q9Y5X4 410 aa12.39□□□□□ -0.43
BRCA1-222ENST00000493919 HAS3O00219 553 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 LGR5O75473 907 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 SASH3O75995 380 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 SMIM10L2AP0DMW4 78 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 SMIM10L2BP0DMW5 78 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 CDK7P50613 346 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 GSTM4Q03013 218 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 PKP1Q13835 747 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 FKBP15Q5T1M5 1219 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 GDF6Q6KF10 455 aaPredicted RBP12.38□□□□□ -0.43
BRCA1-222ENST00000493919 FAM173BQ6P4H8 233 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 ANKRD33Q7Z3H0 272 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 SPERTQ8NA61 448 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 UBE2OQ9C0C9 1292 aaKnown RBP12.38□□□□□ -0.43
BRCA1-222ENST00000493919 EBF2Q9HAK2 575 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 PREBQ9HCU5 417 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 PDLIM7Q9NR12 457 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 GTF2IRD1Q9UHL9 959 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 PCDHA12Q9UN75 941 aa12.38□□□□□ -0.43
BRCA1-222ENST00000493919 LAMA2P24043 3122 aaKnown RBP12.38□□□□□ -0.43
BRCA1-222ENST00000493919 TRIM43BA6NCK2 446 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 POTEMA6NI47 508 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 POLR2EP19388 210 aaKnown RBP12.37□□□□□ -0.43
BRCA1-222ENST00000493919 ATP4AP20648 1035 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 CD97P48960 835 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 PPFIA1Q13136 1202 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 PPP2R5CQ13362 524 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 BYSLQ13895 437 aaKnown RBP12.37□□□□□ -0.43
BRCA1-222ENST00000493919 ACAP1Q15027 740 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 LLGL2Q6P1M3 1020 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.37□□□□□ -0.43
BRCA1-222ENST00000493919 CABP7Q86V35 215 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 GALNT6Q8NCL4 622 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 CCHCR1Q8TD31 782 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 CDKL2Q92772 493 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 SDCCAG3Q96C92 435 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 MTMR9Q96QG7 549 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 RNPEPQ9H4A4 650 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 TMEM39AQ9NV64 488 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.37□□□□□ -0.43
BRCA1-222ENST00000493919 IGSF9BQ9UPX0 1349 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 MYH9P35579 1960 aaKnown RBP12.37□□□□□ -0.43
BRCA1-222ENST00000493919 C17orf102A2RUQ5 167 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 A6NNZ2 444 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 EML1O00423 815 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 UBL4AP11441 157 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 CYP2C9P11712 490 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 WEE1P30291 646 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 FAAP100Q0VG06 881 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 PTGDRQ13258 359 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 MSLNQ13421 630 aaPredicted RBP12.37□□□□□ -0.43
BRCA1-222ENST00000493919 PTGISQ16647 500 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 UGCGQ16739 394 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 TUBB8Q3ZCM7 444 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 CCDC40Q4G0X9 1142 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 SH3RF1Q7Z6J0 888 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 HS6ST3Q8IZP7 471 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 CARNMT1Q8N4J0 409 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 TOX2Q96NM4 488 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 FAM167BQ9BTA0 163 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 PPP1R12CQ9BZL4 782 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 FTOQ9C0B1 505 aaKnown RBP eCLIP12.37□□□□□ -0.43
BRCA1-222ENST00000493919 SETD4Q9NVD3 440 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 ZFATQ9P243 1243 aa12.37□□□□□ -0.43
BRCA1-222ENST00000493919 TTC7AQ9ULT0 858 aaPredicted RBP12.37□□□□□ -0.43
BRCA1-222ENST00000493919 WDR81Q562E7 1941 aa12.36□□□□□ -0.43
BRCA1-222ENST00000493919 MYH15Q9Y2K3 1946 aa12.36□□□□□ -0.43
BRCA1-222ENST00000493919 IGKV6D-21A0A0A0MT36 114 aa12.36□□□□□ -0.43
BRCA1-222ENST00000493919 POTEB3A0JP26 581 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms