RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 RBAK-RBAKDNI3L0D1 243 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 CCP110O43303 1012 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 ZNF623O75123 536 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 NDUFA10O95299 355 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 GHRP10912 638 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 KCNE1P15382 129 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 SELPP16109 830 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 CD52P31358 61 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 MFAP3P55082 362 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 TFAMQ00059 246 aaKnown RBP12.37□□□□□ -0.43
C9orf3-220ENST00000489318 BFSP2Q13515 415 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 ASIC2Q16515 512 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 TWF2Q6IBS0 349 aaKnown RBP12.37□□□□□ -0.43
C9orf3-220ENST00000489318 SLC39A5Q6ZMH5 540 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 TOGARAM2Q6ZUX3 1019 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 LRRC8DQ7L1W4 858 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 MRPL10Q7Z7H8 261 aaKnown RBP12.37□□□□□ -0.43
C9orf3-220ENST00000489318 PPM1KQ8N3J5 372 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 UBR7Q8N806 425 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 EIF3CQ99613 913 aaKnown RBP12.37□□□□□ -0.43
C9orf3-220ENST00000489318 IMPG2Q9BZV3 1241 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 XYLT2Q9H1B5 865 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 NHEJ1Q9H9Q4 299 aaPredicted RBP12.37□□□□□ -0.43
C9orf3-220ENST00000489318 APOBEC3GQ9HC16 384 aaKnown RBP12.37□□□□□ -0.43
C9orf3-220ENST00000489318 UBE2TQ9NPD8 197 aaPredicted RBP12.37□□□□□ -0.43
C9orf3-220ENST00000489318 FAM105AQ9NUU6 356 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 SIX4Q9UIU6 781 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 ITGA11Q9UKX5 1188 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 HES2Q9Y543 173 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 ADGRG1Q9Y653 693 aa12.37□□□□□ -0.43
C9orf3-220ENST00000489318 TLR3O15455 904 aaKnown RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 EVI5O60447 810 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 MGEA5O60502 916 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 GFPT2O94808 682 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 CST3P01034 146 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 MYCP01106 439 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 PLEKP08567 350 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 CCDC175P0C221 793 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 CCDC172P0C7W6 258 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 TBXAS1P24557 533 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 ATICP31939 592 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 CYLC1P35663 651 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 NFX1Q12986 1120 aaKnown RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 CUL2Q13617 745 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 SGSM1Q2NKQ1 1148 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 WDR44Q5JSH3 913 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 FAM71AQ8IYT1 594 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 KAT5Q92993 513 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 FAM212AQ96EL1 285 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 ZMAT2Q96NC0 199 aaKnown RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 PI4K2AQ9BTU6 479 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 NIF3L1Q9GZT8 377 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 FAM124BQ9H5Z6 455 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 UBQLN1Q9UMX0 589 aaKnown RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 NENFQ9UMX5 172 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 CNTN6Q9UQ52 1028 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 PPP2R2CQ9Y2T4 447 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 REXO2Q9Y3B8 237 aaKnown RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 PCDHB2Q9Y5E7 798 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 EPN1Q9Y6I3 576 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-220ENST00000489318 SCN5AQ14524 2016 aa12.36□□□□□ -0.43
C9orf3-220ENST00000489318 TSC2P49815 1807 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 A0A0U1RQF3 1178 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 GOLGA6L9A6NEM1 432 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 USP27XA6NNY8 438 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 FOXN3O00409 490 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-220ENST00000489318 INPPL1O15357 1258 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 ZSCAN12O43309 604 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 PHACTR2O75167 634 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 PNMA6AP0CW24 399 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-220ENST00000489318 SKIP12755 728 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 ZSCAN20P17040 1043 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-220ENST00000489318 ATF7P17544 494 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-220ENST00000489318 CYP3A5P20815 502 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 ACO1P21399 889 aaKnown RBP12.35□□□□□ -0.43
C9orf3-220ENST00000489318 EIF4A3P38919 411 aaKnown RBP12.35□□□□□ -0.43
C9orf3-220ENST00000489318 KIF11P52732 1056 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 MYL6P60660 151 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 KLHL30Q0D2K2 578 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 SCARA3Q6AZY7 606 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 ZNF662Q6ZS27 426 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 HACE1Q8IYU2 909 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 C17orf53Q8N3J3 647 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-220ENST00000489318 TATDN2Q93075 761 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 KIF12Q96FN5 646 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 PPP1R13BQ96KQ4 1090 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 CCDC42Q96M95 316 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 DESI2Q9BSY9 194 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 CXCL16Q9H2A7 254 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 RNF39Q9H2S5 420 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 HAUS4Q9H6D7 363 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 GIT1Q9Y2X7 761 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 NUB1Q9Y5A7 615 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 SCN1AP35498 2009 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 MICAL3Q7RTP6 2002 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 CEP350Q5VT06 3117 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 UMODL1Q5DID0 1318 aa12.35□□□□□ -0.43
C9orf3-220ENST00000489318 SMIM28A0A1B0GU29 152 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 PTGESO14684 152 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms