RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SMARCA1P28370 1054 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 SLC7A1P30825 629 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 HALP42357 657 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 FOXO4P98177 505 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 TRIM14Q14142 442 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 GJC2Q5T442 439 aaPredicted RBP4.89□□□□□ -1.63
PTCD3-216ENST00000487043 TAS1R1Q7RTX1 841 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 DPP9Q86TI2 863 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 MSL3Q8N5Y2 521 aaKnown RBP4.89□□□□□ -1.63
PTCD3-216ENST00000487043 OR2C3Q8N628 320 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 TTLL6Q8N841 843 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 KYQ8NBH2 561 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 MYRIPQ8NFW9 859 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 FBXO18Q8NFZ0 1043 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 IL31RAQ8NI17 732 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 PPM1EQ8WY54 764 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 ZBTB8AQ96BR9 441 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 MRGPRX4Q96LA9 322 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 SAMD11Q96NU1 681 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 PTPN18Q99952 460 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 PDCD2LQ9BRP1 358 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 CRB3Q9BUF7 120 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 VPS11Q9H270 941 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 EPB41L4AQ9HCS5 686 aaPredicted RBP4.89□□□□□ -1.63
PTCD3-216ENST00000487043 OGDHLQ9ULD0 1010 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 PCDHA5Q9Y5H7 936 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 USP19O94966 1318 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 MYBBP1AQ9BQG0 1328 aaKnown RBP4.89□□□□□ -1.63
PTCD3-216ENST00000487043 KIF15Q9NS87 1388 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 ANKRD50Q9ULJ7 1429 aa4.89□□□□□ -1.63
PTCD3-216ENST00000487043 DENND4BO75064 1496 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ZNF518AQ6AHZ1 1483 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 TEX14Q8IWB6 1497 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ADAMTS20P59510 1910 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 KLRG2A4D1S0 409 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-216ENST00000487043 NCK2O43639 380 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 SH3BP5O60239 455 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ARIH2O95376 493 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 HMGCRP04035 888 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 MALP21145 153 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 SREBF1P36956 1147 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 CASP5P51878 434 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 MLLT6P55198 1093 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-216ENST00000487043 BTKQ06187 659 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ADAM15Q13444 863 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 SNAPC2Q13487 334 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 RAPGEF1Q13905 1077 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 RAB39AQ14964 217 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 MST1LQ2TV78 715 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 C19orf54Q5BKX5 351 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 FAM209BQ5JX69 171 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 CNKSR3Q6P9H4 555 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 LIX1LQ8IVB5 337 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 SP8Q8IXZ3 490 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 RTKN2Q8IZC4 609 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 UNC5BQ8IZJ1 945 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ZGPATQ8N5A5 531 aaKnown RBP4.88□□□□□ -1.63
PTCD3-216ENST00000487043 MZB1Q8WU39 189 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ZNF480Q8WV37 535 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 STON2Q8WXE9 905 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ANKS1AQ92625 1134 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 KIAA1191Q96A73 305 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 FAM167AQ96KS9 214 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 MPHOSPH9Q99550 1183 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 HERPUD2Q9BSE4 406 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 SELENOOQ9BVL4 669 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 SENP6Q9GZR1 1112 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-216ENST00000487043 BTBD1Q9H0C5 482 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 CERS4Q9HA82 394 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ZNF287Q9HBT7 754 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 ARFGAP3Q9NP61 516 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 FEZ2Q9UHY8 353 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-216ENST00000487043 CDC23Q9UJX2 597 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 PCDHA6Q9UN73 950 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 LRCH1Q9Y2L9 728 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 PCDHA1Q9Y5I3 950 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 MORC2Q9Y6X9 1032 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-216ENST00000487043 POGZQ7Z3K3 1410 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 MLH3Q9UHC1 1453 aa4.88□□□□□ -1.63
PTCD3-216ENST00000487043 DUOX2Q9NRD8 1548 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 PLXNC1O60486 1568 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 KDM6BO15054 1643 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 PPRC1Q5VV67 1664 aaKnown RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 ADCY6O43306 1168 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 FRS3O43559 492 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 PIP5K1CO60331 668 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 CYP7B1O75881 506 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 ALDH1A2O94788 518 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 AMY1AP04745 511 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 CHGBP05060 677 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 COL6A1P12109 1028 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 BRAFP15056 766 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 ABCB4P21439 1286 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 IGFBP6P24592 240 aaPredicted RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 POLD1P28340 1107 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 IL13P35225 146 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 STT3AP46977 705 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 LIMS1P48059 325 aa4.87□□□□□ -1.63
PTCD3-216ENST00000487043 PPM1FP49593 454 aaPredicted RBP4.87□□□□□ -1.63
PTCD3-216ENST00000487043 TLE1Q04724 770 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms