RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ANHXE9PGG2 379 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 STK25O00506 426 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 CXCL8P10145 99 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 SRFP11831 508 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 UBA7P41226 1012 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 ARPP19P56211 112 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 ROR1Q01973 937 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 SPAG1Q07617 926 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 ZPBP2Q6X784 338 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 KCTD17Q8N5Z5 321 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 RASSF8Q8NHQ8 419 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 FGF14Q92915 247 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 NXPE3Q969Y0 559 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 CALML4Q96GE6 196 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 AK8Q96MA6 479 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 RPP25Q9BUL9 199 aaKnown RBP23.55■■□□□ 1.36
USP40-215ENST00000484528 IRF2BPLQ9H1B7 796 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 CDH7Q9ULB5 785 aa23.55■■□□□ 1.36
USP40-215ENST00000484528 ANK1P16157 1881 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 VPS37CA5D8V6 355 aaPredicted RBP23.54■■□□□ 1.36
USP40-215ENST00000484528 CLDN3O15551 220 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 RFX1P22670 979 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 NCKAP1LP55160 1127 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 KARSQ15046 597 aaKnown RBP23.54■■□□□ 1.36
USP40-215ENST00000484528 PARM1Q6UWI2 310 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 HAUS6Q7Z4H7 955 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 ING5Q8WYH8 240 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 FGF13Q92913 245 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 BLOC1S4Q9NUP1 217 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 LARSQ9P2J5 1176 aaKnown RBP23.54■■□□□ 1.36
USP40-215ENST00000484528 DNMT3BQ9UBC3 853 aaKnown RBP23.54■■□□□ 1.36
USP40-215ENST00000484528 WNT16Q9UBV4 365 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 USP34Q70CQ2 3546 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 COL4A3Q01955 1670 aa23.54■■□□□ 1.36
USP40-215ENST00000484528 PTPRZ1P23471 2315 aaPredicted RBP23.53■■□□□ 1.36
USP40-215ENST00000484528 WDR27A2RRH5 827 aa23.53■■□□□ 1.36
USP40-215ENST00000484528 PLCG1P19174 1290 aa23.53■■□□□ 1.36
USP40-215ENST00000484528 MCM4P33991 863 aa23.53■■□□□ 1.36
USP40-215ENST00000484528 MCL1Q07820 350 aa23.53■■□□□ 1.36
USP40-215ENST00000484528 MCM6Q14566 821 aa23.53■■□□□ 1.36
USP40-215ENST00000484528 SF3A1Q15459 793 aaKnown RBP23.53■■□□□ 1.36
USP40-215ENST00000484528 UVSSAQ2YD98 709 aa23.53■■□□□ 1.36
USP40-215ENST00000484528 PABPC1LQ4VXU2 614 aaKnown RBP23.53■■□□□ 1.36
USP40-215ENST00000484528 BRAPQ7Z569 592 aa23.53■■□□□ 1.36
USP40-215ENST00000484528 KCNG1Q9UIX4 513 aa23.53■■□□□ 1.36
USP40-215ENST00000484528 K7ENM7 598 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 GFRA3O60609 400 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 FAM13AO94988 1023 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 KRT18P05783 430 aaKnown RBP23.52■■□□□ 1.36
USP40-215ENST00000484528 RPL9P32969 192 aaKnown RBP23.52■■□□□ 1.36
USP40-215ENST00000484528 TNFSF9P41273 254 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 SLC8B1Q6J4K2 584 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 MYCT1Q8N699 235 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 ZHX3Q9H4I2 956 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 TBC1D17Q9HA65 648 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 ODF2LQ9ULJ1 636 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 ZFP37Q9Y6Q3 630 aaPredicted RBP23.52■■□□□ 1.36
USP40-215ENST00000484528 MIA3Q5JRA6 1907 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 FAM186AA6NE01 2351 aa23.52■■□□□ 1.36
USP40-215ENST00000484528 H0YCG3 227 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 HNRNPDLO14979 420 aaKnown RBP23.51■■□□□ 1.35
USP40-215ENST00000484528 SYN3O14994 580 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 LIG4P49917 911 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 ZBTB41Q5SVQ8 909 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 NPAS3Q8IXF0 933 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 CCDC105Q8IYK2 499 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 RAD54LQ92698 747 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 SUSD3Q96L08 255 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 RTP3Q9BQQ7 232 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 ARHGEF3Q9NR81 526 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 FBXL5Q9UKA1 691 aa23.51■■□□□ 1.35
USP40-215ENST00000484528 PRRG1O14668 218 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 SLC26A4O43511 780 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 BMP15O95972 392 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 POU2F2P09086 479 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 ELF1P32519 619 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 LONP1P36776 959 aaKnown RBP23.5■■□□□ 1.35
USP40-215ENST00000484528 GUCY2FP51841 1108 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 CTXN3Q4LDR2 81 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 DTWD2Q8NBA8 298 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 ZNF461Q8TAF7 563 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 KIF12Q96FN5 646 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 KXD1Q9BQD3 176 aa23.5■■□□□ 1.35
USP40-215ENST00000484528 MRPS23Q9Y3D9 190 aaKnown RBP23.5■■□□□ 1.35
USP40-215ENST00000484528 TTC26A0AVF1 554 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 H7C4K7 107 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 TBC1D4O60343 1298 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 ABLIM3O94929 683 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 LRG1P02750 347 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 RHOP08100 348 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 CLTAP09496 248 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 GPC5P78333 572 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 SLC5A9Q2M3M2 681 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 SPECC1Q5M775 1068 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 ZNF280DQ6N043 979 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 PARVGQ9HBI0 331 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 CYP4F11Q9HBI6 524 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 TBX20Q9UMR3 447 aa23.49■■□□□ 1.35
USP40-215ENST00000484528 MYO15AQ9UKN7 3530 aa23.48■■□□□ 1.35
USP40-215ENST00000484528 VPS13AQ96RL7 3174 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms