RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SLC7A6OSQ96CW6 309 aaPredicted RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 FIZ1Q96SL8 496 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 STOML1Q9UBI4 398 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 USP20Q9Y2K6 914 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 EML1O00423 815 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 PRPF4O43172 522 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP40-214ENST00000483519 GNAT1P11488 350 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 EPHB2P29323 1055 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 CHRNA5P30532 468 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 ZNF76P36508 570 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 TRIP13Q15645 432 aaPredicted RBP14.13□□□□□ -0.15
USP40-214ENST00000483519 CPNE8Q86YQ8 564 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 TPH2Q8IWU9 490 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 TTLL6Q8N841 843 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 ATL2Q8NHH9 583 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 LRRC8CQ8TDW0 803 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 AMNQ9BXJ7 453 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 KCND2Q9NZV8 630 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 SMG5Q9UPR3 1016 aaKnown RBP14.13□□□□□ -0.15
USP40-214ENST00000483519 DAGLAQ9Y4D2 1042 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 H0Y3Z8 333 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 EDF1O60869 148 aaKnown RBP14.13□□□□□ -0.15
USP40-214ENST00000483519 MUTP22033 750 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 ATP2B4P23634 1241 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 MARK3P27448 753 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 VAMP7P51809 220 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 RNASELQ05823 741 aaKnown RBP14.13□□□□□ -0.15
USP40-214ENST00000483519 PDK4Q16654 411 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 EPC2Q52LR7 807 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 TMEM63BQ5T3F8 832 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 IRGCQ6NXR0 463 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 TMEM154Q6P9G4 183 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 CCDC89Q8N998 374 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 DCAF4Q8WV16 495 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 ATG4AQ8WYN0 398 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 P2RX7Q99572 595 aaKnown RBP14.13□□□□□ -0.15
USP40-214ENST00000483519 HSD17B14Q9BPX1 270 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 FOXP3Q9BZS1 431 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 DCLK3Q9C098 648 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 SENP1Q9P0U3 644 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 SUGT1Q9Y2Z0 365 aa14.13□□□□□ -0.15
USP40-214ENST00000483519 MROH7Q68CQ1 1323 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 BBOX1O75936 387 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 UFL1O94874 794 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 PTPN4P29074 926 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 SHMT1P34896 483 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 RAB27AP51159 221 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 CENPCQ03188 943 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 RASA3Q14644 834 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 LLGL1Q15334 1064 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 ZNF365Q70YC5 407 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 TRABD2AQ86V40 505 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 FAM71AQ8IYT1 594 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 MAML1Q92585 1016 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 CFAP57Q96MR6 1250 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 ASB3Q9Y575 518 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 EXOC1LA0A1B0GW35 172 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 SPDYE5A6NIY4 337 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 NVLO15381 856 aaKnown RBP14.12□□□□□ -0.15
USP40-214ENST00000483519 T-ENOLP0DO92 83 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 ZRSR2Q15696 482 aaKnown RBP14.12□□□□□ -0.15
USP40-214ENST00000483519 DALRD3Q5D0E6 543 aaKnown RBP14.12□□□□□ -0.15
USP40-214ENST00000483519 SLC51AQ86UW1 340 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 NLGN2Q8NFZ4 835 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 RNF217Q8TC41 542 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 ZFAND2BQ8WV99 257 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 C10orf82Q8WW14 230 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 C9orf72Q96LT7 481 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 TMX4Q9H1E5 349 aaPredicted RBP14.12□□□□□ -0.15
USP40-214ENST00000483519 DENND2DQ9H6A0 471 aaPredicted RBP14.12□□□□□ -0.15
USP40-214ENST00000483519 TLE6Q9H808 572 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 LNPEPQ9UIQ6 1025 aa14.12□□□□□ -0.15
USP40-214ENST00000483519 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.12□□□□□ -0.15
USP40-214ENST00000483519 DCAF8L1A6NGE4 600 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 VHLP40337 213 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 VPS41P49754 854 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 DLG4P78352 724 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 FMO1Q01740 532 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 CCDC6Q16204 474 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 SLC45A4Q5BKX6 768 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 IZUMO3Q5VZ72 239 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 KIAA0825Q8IV33 1275 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 GALNT15Q8N3T1 639 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 TTC8Q8TAM2 541 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 DYDC2Q96IM9 177 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 SMC6Q96SB8 1091 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 SYT15Q9BQS2 421 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 SAR1AQ9NR31 198 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 ZFP69BQ9UJL9 534 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 LRCH1Q9Y2L9 728 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 GREB1LQ9C091 1923 aaPredicted RBP14.11□□□□□ -0.15
USP40-214ENST00000483519 SPAG7O75391 227 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 AP1G2O75843 785 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 SLITRK3O94933 977 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 CBX6O95503 412 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 GCLCP48506 637 aaPredicted RBP14.11□□□□□ -0.15
USP40-214ENST00000483519 GCLMP48507 274 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 GPSM2P81274 684 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 CDR2Q01850 454 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 FYB2Q5VWT5 728 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms