RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 CDH7Q9ULB5 785 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 NUB1Q9Y5A7 615 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 CDY1Q9Y6F8 540 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 MORC2Q9Y6X9 1032 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 ARHGEF37A1IGU5 675 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 CYP3A5P20815 502 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 LRPAP1P30533 357 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 RAD51AP2Q09MP3 1159 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 HTR4Q13639 388 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 MRPL58Q14197 206 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 SLC10A6Q3KNW5 377 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 ARSHQ5FYA8 562 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 VARS2Q5ST30 1063 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 TPGS2Q68CL5 300 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 ZNF280DQ6N043 979 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 HAUS6Q7Z4H7 955 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 GRASPQ7Z6J2 395 aaPredicted RBP13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 CD302Q8IX05 232 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 APPL2Q8NEU8 664 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 RASSF8Q8NHQ8 419 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 LARP4BQ92615 738 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 RAD54LQ92698 747 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 BICD1Q96G01 975 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 SUSD3Q96L08 255 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 REEP2Q9BRK0 252 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 ANK1P16157 1881 aa13.24□□□□□ -0.29
SQSTM1-207ENST00000481335 MIA3Q5JRA6 1907 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 TTC26A0AVF1 554 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 PROB1E7EW31 1015 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 K7ENM7 598 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 HNRNPDLO14979 420 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 ADAM12O43184 909 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 TBC1D4O60343 1298 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 ABLIM3O94929 683 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 FAM13AO94988 1023 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 HARSP12081 509 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 ATF2P15336 505 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 PLCG1P19174 1290 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 BRCC3P46736 316 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 LIG4P49917 911 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 POU5F1Q01860 360 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 ROR1Q01973 937 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 PPP2R3AQ06190 1150 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 SF3A1Q15459 793 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 PABPC1LQ4VXU2 614 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 PHLDB3Q6NSJ2 640 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 GPBP1Q86WP2 473 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 TCEAL8Q8IYN2 117 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 SIX5Q8N196 739 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 INTS4Q96HW7 963 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 ZBTB45Q96K62 511 aaPredicted RBP13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 PLIN2Q99541 437 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 ST6GALNAC4Q9H4F1 302 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 BLOC1S4Q9NUP1 217 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 STK17AQ9UEE5 414 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 TBX20Q9UMR3 447 aa13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 UBQLN1Q9UMX0 589 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-207ENST00000481335 OGTO15294 1046 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 CCL16O15467 120 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 TRAK2O60296 914 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 TBCAO75347 108 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 MICAL2O94851 1124 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 LRG1P02750 347 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 ADRB2P07550 413 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 CXCL8P10145 99 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 MYBP10242 640 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 NPR3P17342 541 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 ELF1P32519 619 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 MCM4P33991 863 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 TXLNAP40222 546 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 MATR3P43243 847 aaKnown RBP eCLIP13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 AARSP49588 968 aaKnown RBP eCLIP13.22□□□□□ -0.291e-7■□□□□ 8.5
SQSTM1-207ENST00000481335 GTF2BQ00403 316 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 RSPO2Q6UXX9 243 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 MAP4K3Q8IVH8 894 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 CCDC105Q8IYK2 499 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 MYCT1Q8N699 235 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 FLCNQ8NFG4 579 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 ATOH1Q92858 354 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 FGF13Q92913 245 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 HVCN1Q96D96 273 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 GDE1Q9NZC3 331 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 CCDC39Q9UFE4 941 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 PCDHB8Q9UN66 801 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 NUMBLQ9Y6R0 609 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 VPS13AQ96RL7 3174 aa13.22□□□□□ -0.29
SQSTM1-207ENST00000481335 FAM186AA6NE01 2351 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 WDR27A2RRH5 827 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 VPS37CA5D8V6 355 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 M0QZQ0 153 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 MEFVO15553 781 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 NARSO43776 548 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 FAM189A1O60320 539 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 KRT18P05783 430 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 DDIT3P35638 169 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 NBL1P41271 181 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 PFKPQ01813 784 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 KARSQ15046 597 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 ZBTB6Q15916 424 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 KRI1Q8N9T8 703 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms