RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 FAM81AQ8TBF8 368 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 ZNF75CPQ92670 426 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 NAP1L4Q99733 375 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 HEY2Q9UBP5 337 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 GOLGA8RI6L899 631 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 FSCN2O14926 492 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 TROVE2P10155 538 aaKnown RBP eCLIP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 TAL1P17542 331 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 CETN1Q12798 172 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 USH1GQ495M9 461 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 ODR4Q5SWX8 454 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 ZFYVE27Q5T4F4 411 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 PPP1R18Q6NYC8 613 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 GRK7Q8WTQ7 553 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 IFT43Q96FT9 208 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 EIF2AK1Q9BQI3 630 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 BTBD10Q9BSF8 475 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 PARVGQ9HBI0 331 aa19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 FBXO6Q9NRD1 293 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-207ENST00000479965 ATAD5Q96QE3 1844 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 TISP43B9A030 160 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 TCEA3O75764 348 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 NEK3P51956 506 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 ATL2Q8NHH9 583 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 OCEL1Q9H607 264 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 ACTL7BQ9Y614 415 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 EML1O00423 815 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 GSC2O15499 205 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 CALCAP01258 141 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 MAPK4P31152 587 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 DYNC1I2Q13409 638 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 FASTKD3Q14CZ7 662 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 P3H1Q32P28 736 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 SLC45A4Q5BKX6 768 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 EPS8L1Q8TE68 723 aa19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 KLF6Q99612 283 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 ATF5Q9Y2D1 282 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-207ENST00000479965 FAM86B1E9PN63 330 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 MAGEB2O15479 319 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 FAM86B2P0C5J1 330 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 SLURP2P0DP57 97 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 QRICH1Q2TAL8 776 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 PCNX4Q63HM2 1172 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 KBTBD2Q8IY47 623 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 ETNPPLQ8TBG4 499 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 PRR11Q96HE9 360 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 CYTH2Q99418 400 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 DCLK3Q9C098 648 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 KRT4P19013 534 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 OCRLQ01968 901 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 CAV1Q03135 178 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 TBC1D10BQ4KMP7 808 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 MORC4Q8TE76 937 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 DENND1AQ8TEH3 1009 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 CFAP57Q96MR6 1250 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 OLFML3Q9NRN5 406 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 C2orf71A6NGG8 1288 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 ZBED4O75132 1171 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 BAG2O95816 211 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 POTEJP0CG39 1038 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 RALAP11233 206 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 MCL1Q07820 350 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 MAPK6Q16659 721 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 PSPC1Q8WXF1 523 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 BICD1Q96G01 975 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 NDNQ99608 321 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 ZNF184Q99676 751 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 SHANK3Q9BYB0 1731 aa19.91■□□□□ 0.78
CCDC88B-207ENST00000479965 TRAFD1O14545 582 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 ECE2O60344 883 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 ADRA1DP25100 572 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 PPP3CAQ08209 521 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 PPP2R5CQ13362 524 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 MTM1Q13496 603 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 EPC2Q52LR7 807 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 NBPF5PQ86XG9 351 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 MKNK1Q9BUB5 465 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 SYNCQ9H7C4 482 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 LMCD1Q9NZU5 365 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 C2CD2LO14523 706 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 SORBS3O60504 671 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 ESRRAP11474 423 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 GAP43P17677 238 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 TRMT1LQ7Z2T5 733 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 CCDC89Q8N998 374 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 FAM161BQ96MY7 647 aa19.9■□□□□ 0.78
CCDC88B-207ENST00000479965 PYGBP11216 843 aa19.89■□□□□ 0.78
CCDC88B-207ENST00000479965 SERPINB3P29508 390 aa19.89■□□□□ 0.78
CCDC88B-207ENST00000479965 ZC3H12AQ5D1E8 599 aaKnown RBP19.89■□□□□ 0.78
CCDC88B-207ENST00000479965 LLGL2Q6P1M3 1020 aa19.89■□□□□ 0.78
CCDC88B-207ENST00000479965 LMO3Q8TAP4 145 aa19.89■□□□□ 0.78
CCDC88B-207ENST00000479965 P2RX7Q99572 595 aaKnown RBP19.89■□□□□ 0.78
CCDC88B-207ENST00000479965 TTC1Q99614 292 aa19.89■□□□□ 0.78
CCDC88B-207ENST00000479965 SPATA31A1Q5TZJ5 1347 aa19.89■□□□□ 0.78
CCDC88B-207ENST00000479965 SCN7AQ01118 1682 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 BMP3P12645 472 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 HOXA13P31271 388 aaPredicted RBP19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 IKQ13123 557 aaPredicted RBP19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 CFAP157Q5JU67 520 aa19.89■□□□□ 0.77
CCDC88B-207ENST00000479965 RINLQ6ZS11 566 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms